Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq141 134 4e-26 seq21 131 5e-25 seq7 109 2e-18 seq131 96.9 1e-14 >seq141 Length=465755 Score = 134 bits (148), Expect = 4e-26 Identities = 246/355 (69%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 372700 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 372641 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || || |||||||| || | | |||| ||| | | || |||||| Sbjct 372640 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 372582 Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||||||| || ||||| | |||||||| || || |||||||| Sbjct 372581 GCCATT-GAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 372523 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||| | || ||||| || || Sbjct 372522 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTT 372463 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| || Sbjct 372462 CTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 372403 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || |||||||| |||||| Sbjct 372402 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCC 372348 >seq21 Length=197681 Score = 131 bits (144), Expect = 5e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | |||| ||||| | ||||||||||||||| || ||| || || || Sbjct 46497 TCTTCCAGAGCTTTGACCAAACGTCTCTGAATATAACCAGTCTCAGCTGTCTTGACGGCA 46438 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | || ||| || Sbjct 46437 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGAGGGTGTCAGA 46378 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | || |||||||||| ||||| || ||||| || | || |||||| Sbjct 46377 CCACGGAGGTAAGAATTCTCAACGAAGCCACGAGCTTCGGGTGAGTAATCATCCTTGGTG 46318 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || | ||||| |||| ||||||||||| ||||| ||||| Sbjct 46317 AAATGCGGGAGAGTTCGGTATTTGAAGCCGAATGGAATACGCTTTCCTTCAACAATCTGC 46258 Query 302812 TGTCC 302816 ||||| Sbjct 46257 TGTCC 46253 >seq7 Length=2436850 Score = 109 bits (120), Expect = 2e-18 Identities = 553/877 (63%), Gaps = 11/877 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | |||||| ||| ||||| || || |||||| || | ||||||||||| Sbjct 487165 GTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTT 487106 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| | ||| | || || || |||| || Sbjct 487105 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGTCTGGGC 487046 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 ||||| || ||| || | | ||| || |||| | || ||| Sbjct 487045 TTCCAGGATGGAATACCACAGCTTCTGAGCACGGATGGTCTTGCGACCACGTCCCTCCTT 486986 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||||| | | | ||||| || || || ||| || |||||||| Sbjct 486985 CTCGTACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 486926 Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926 | | |||||| | |||| ||| | || || | | |||||| ||| || | Sbjct 486925 TTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAAGAG 486869 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | |||| ||| | ||| | || ||| || | |||||| || Sbjct 486868 ATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTT 486809 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | |||||| | || | || ||||| || || || ||||| Sbjct 486808 CTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAA 486749 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || ||||| | ||||| || |||||||| | Sbjct 486748 GGCACCAGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCG 486689 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| ||||||||||| ||||| || || ||||| || ||| | || || | | Sbjct 486688 AAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGC 486629 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | || | | | || |||||||| | |||| || ||||| || ||| Sbjct 486628 ACGGATGCGGTGGACGTTCAAGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATG 486570 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | ||| | | ||||| ||||| ||| || | ||| | | |||| | Sbjct 486569 TCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATG 486510 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | || | | || || ||||| ||||| || || || | ||||| | || Sbjct 486509 AGGACAGCTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGA 486450 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 |||| ||||||| | |||||||||| | ||||| | || || | Sbjct 486449 ACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGC 486390 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462 | ||| || | ||| ||| ||||| || ||||| |||||| ||||||| || Sbjct 486389 CAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCA 486330 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||||||| || |||| ||| || || ||||| || Sbjct 486329 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTA 486293 >seq131 Length=1298602 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| ||||| || || || |||||||||||||| || | | Sbjct 812019 TGAGCGATTGTCATACGGGACGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 812078 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||||||||||||||| || || ||| || |||||||| |||||||| Sbjct 812079 CCTTCTCTTGTGAAGGGCATATCCTCTT-GTCGGTAAGTGACACCAATAGTGCCCTTTTG 812137 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 812138 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 812167 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||||||||||||||||||||| ||||| || ||||||||||| | Sbjct 811665 GCACCGTGAGCAATCATACAATCACGCTCCATTTCTCCGAATCGGAGACCACCATCTCTG 811724 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | |||||| |||| || Sbjct 811725 GCACGACCCTCCACAGGTTG 811744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813885040389