Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 147 3e-29 seq141 138 1e-26 seq7 122 1e-21 seq128 86.0 8e-11 >seq11 Length=737084 Score = 147 bits (162), Expect = 3e-29 Identities = 231/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 18164 CCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCA 18223 |||| |||||||||||||| ||| | | || ||||| || |||||| | | | ||| Sbjct 340327 CCGAAGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCTCCATCACCA 340386 Query 18224 CGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGC 18283 |||| || ||||| || ||||||| |||||| || ||||| || |||||||||| | Sbjct 340387 CGCCCCGAAACGAAAAGGACCGCGTCACCATCCACTCCGGCACCGAAGACGGCCTCACTC 340446 Query 18284 TCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCG 18343 ||||| | || || |||| || ||||| || ||||| ||| ||||| | Sbjct 340447 TCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGATCAGCGCCCCAAGGACTACGGCA 340506 Query 18344 ACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGT 18397 || | || | || || ||| || ||||||| |||||| | | |||| Sbjct 340507 ACCAGACCATCGACCTCTACCCCCGTCCCAGCCATGCCGACTGGACCTACCTCGAAAAGT 340566 Query 18398 ACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCG 18457 ||||||||||||| || || ||||| ||||| || ||||||||| | || | Sbjct 340567 ACGGCATCAAGGCCTCCTCCGGCGGCGGCCGCAGCAGCGCGCGCGAGACCATTGCCCGTG 340626 Query 18458 TCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488 | ||||||||||| ||||||||||| ||||| Sbjct 340627 TGGCCGCCGGCGCCGTCGCCGAGAAGTGGCT 340657 >seq141 Length=465755 Score = 138 bits (152), Expect = 1e-26 Identities = 208/290 (72%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| || || |||||||| || ||||| Sbjct 372366 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 372425 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| ||||||||||||||||| Sbjct 372426 CTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAA 372485 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355 | | | || |||| ||||||| | ||| | |||| | ||||||||| || || Sbjct 372486 GGCAACCAGGCGCTGGGCAAAG--GAAGAG----TTCTTGTCCTGGATCCACTTGATGGC 372539 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 |||||||||||| || | | | || | || || |||||| ||||||| | | | Sbjct 372540 CCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 372599 Query 869415 TTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | ||||||| ||||||||||| || || || |||||||| Sbjct 372600 CT--GGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 372647 Score = 118 bits (130), Expect = 1e-20 Identities = 223/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| ||||||||||||||||||||| | || || || Sbjct 372052 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCGCCAAGAGAAATG 372111 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| ||| ||||| | | Sbjct 372112 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGAGAGCGACA 372171 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| |||||||| ||||||||||||||||| ||| ||| || ||||||||||| Sbjct 372172 AGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 372231 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| || || | ||| || ||| || || |||| Sbjct 372232 AGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCAGTGATG 372291 Query 868931 ATCTGCCTGGGCACGTC--GGCCG--AGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | | | ||| || || | | || || |||| | | | || |||||||| Sbjct 372292 ATGTCACGGATCACCTCCTTGCTGGCACGG-TTCTTGAGGTG---AGAGTGCAGCAGGCA 372347 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||| ||| | ||||| Sbjct 372348 GGCAAAGTCGGTGTGGAGACCCT 372370 >seq7 Length=2436850 Score = 122 bits (134), Expect = 1e-21 Identities = 217/314 (69%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || | || |||| ||| ||||| || |||||||| | | |||||||| Sbjct 486724 CTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGA 486665 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | ||| || ||||| Sbjct 486664 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 486605 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || || ||||| ||||| |||| Sbjct 486604 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAGAGTGTCATAGATACCCT 486546 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || ||| |||||||||| || | ||||| || || || | |||| || | Sbjct 486545 CAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTAC 486486 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | || ||||| || ||||| | || |||||| |||| | |||||| || ||| | Sbjct 486485 CAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATG 486426 Query 1630364 TGGCGAGCACGCGC 1630377 | | || || ||| Sbjct 486425 TCTCCAGGACACGC 486412 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | |||| ||| ||||| ||||| || | ||| | || || ||| ||||||| ||| Sbjct 628236 GCCTCAAACTTCCTTGACATTAAGCCGCTCTTGGATGTCGGCTGTAAGACTGTGGCGAAC 628177 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct 628176 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 628128 >seq128 Length=1745744 Score = 86.0 bits (94), Expect = 8e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| ||||||||| || |||||| ||||| |||||||||||||| ||||| || | Sbjct 1206658 GTCGATATCGGGGTCGTTGATCAGGCCTTTCCAGCCGACGGTCGTGCGAGGCTTCTCCAG 1206599 Query 1727026 ATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTC 1727067 ||||||||||| || | ||| || ||||| || || ||| Sbjct 1206598 GTAGGCGCGCATCACGATGCAGAGATCGTCGGAGAGCTTGTC 1206557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107123033257449