Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq141 174 2e-37 seq7 118 2e-20 seq128 98.7 2e-14 >seq141 Length=465755 Score = 174 bits (192), Expect = 2e-37 Identities = 239/332 (72%), Gaps = 13/332 (4%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| || || |||||||| || ||||| Sbjct 372366 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 372425 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| ||||||||||||||||| Sbjct 372426 CTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAA 372485 Query 794460 GCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 | | || || |||| |||||| || || | | ||| ||||||||| || || Sbjct 372486 GGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGATGGC 372539 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || |||||| ||||||| | || Sbjct 372540 CCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG--CTG 372597 Query 794577 CTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 | | | | || ||||| ||||||||||||||| || ||||||||||| ||||||||| Sbjct 372598 CGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATG 372657 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || |||||||||||| || ||||| Sbjct 372658 TTCTCCATCATGATCTGGAAGCCGTAGAAGCA 372689 Score = 113 bits (124), Expect = 7e-19 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| ||||||||||||||||||||| | | Sbjct 372044 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCGCCAA 372103 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || |||||||| | | |||| ||||||| |||| Sbjct 372104 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGA 372163 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | ||||||| |||||||| || || || |||||||| ||| ||| || ||||| Sbjct 372164 GAGCGACAAGCAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCA 372223 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || ||| || | |||| | | || || | ||| || ||| || | Sbjct 372224 TGCCGAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCAT 372283 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 372284 CAGTGATGAT 372293 >seq7 Length=2436850 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 486724 CTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGA 486665 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | ||| || ||||| Sbjct 486664 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 486605 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | ||||| || || ||||| ||||| Sbjct 486604 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTC 486545 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || || | ||| || || Sbjct 486544 AATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACC 486485 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||| || ||||| Sbjct 486484 AGCATTGAACAGGGTGGG 486467 Score = 102 bits (112), Expect = 1e-15 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | |||| ||| ||||| ||||| ||| | ||| | || || ||||| ||||| ||| Sbjct 628236 GCCTCAAACTTCCTTGACATTAAGCCGCTCTTGGATGTCGGCTGTAAGACTGTGGCGAAC 628177 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 628176 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACTTTCAACATCA 628128 Score = 87.8 bits (96), Expect = 3e-11 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 |||||||||||||| ||||||||||| ||| ||| || |||| || ||| ||| Sbjct 487479 GCCGCATGGTAGATGGTCTCAAAGATC-TGCTTGTTCAGCTGACGAGCCTCGGGAGACTC 487421 Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 | |||| | || || || || |||||||| || ||||| || || || || || Sbjct 487420 AAAGGGCATGCGCAGGGCAAGGAAA--GCGTCGGCAAGACCCTGGACACCAACACCAATG 487363 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228 || |||||||||| ||| || |||||||| | || ||||||||||||| || || Sbjct 487362 GGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATG 487303 Query 2070229 ACGCGGTTGAGGTTG 2070243 | ||| |||||| Sbjct 487302 ATCTTGTTAAGGTTG 487288 >seq128 Length=1745744 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 57961 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAATTCACCCGGCAG 58020 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||| || || | ||||||||||| |||| Sbjct 58021 GATCAATCGGACAGATGTCTGGATCTCTCGGG 58052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916225444211483