Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq92 114 2e-20 seq77 114 2e-20 seq67 114 2e-20 seq62 114 2e-20 seq3 114 2e-20 >seq92 Length=352844 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| ||||| || || || | | ||||||| | || || | || | Sbjct 268213 AATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGAT 268154 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| ||| || | || ||| ||| | Sbjct 268153 GTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTC 268094 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| || ||||||| |||||||| ||||||||||||| || Sbjct 268093 GCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 268034 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 268033 AAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 267998 Score = 113 bits (124), Expect = 5e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGG 147164 ||||| |||||| | |||||||| |||||||| |||||| | ||| |||||| Sbjct 267921 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGG 267862 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||||| || | || | || | | ||||| | || || | ||||| Sbjct 267861 -TTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAAT 267803 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||||||||| ||||||| ||| | || | || | |||||||||| ||| Sbjct 267802 CTCGGCCAGCTGGTCGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGC 267743 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||||| |||||| || ||||| || || |||||||| ||| || | ||| | Sbjct 267742 GCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGT 267683 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| | | | ||| |||||| |||| || | | |||||||||| || || Sbjct 267682 CAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGAC 267623 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | || ||| | | ||| |||| |||| |||||||||||| ||||| Sbjct 267622 GTCGTTGAGGGCGATGGAGGACGTGTTGCCCTCGATGAACCAGAGGAGCTC 267572 >seq77 Length=352580 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| ||||| || || || | | ||||||| | || || | || | Sbjct 86255 AATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGAT 86314 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| ||| || | || ||| ||| | Sbjct 86315 GTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTC 86374 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| || ||||||| |||||||| ||||||||||||| || Sbjct 86375 GCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 86434 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 86435 AAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 86470 Score = 113 bits (124), Expect = 5e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGG 147164 ||||| |||||| | |||||||| |||||||| |||||| | ||| |||||| Sbjct 86547 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGG 86606 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||||| || | || | || | | ||||| | || || | ||||| Sbjct 86607 -TTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAAT 86665 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||||||||| ||||||| ||| | || | || | |||||||||| ||| Sbjct 86666 CTCGGCCAGCTGGTCGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGC 86725 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||||| |||||| || ||||| || || |||||||| ||| || | ||| | Sbjct 86726 GCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGT 86785 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| | | | ||| |||||| |||| || | | |||||||||| || || Sbjct 86786 CAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGAC 86845 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | || ||| | | ||| |||| |||| |||||||||||| ||||| Sbjct 86846 GTCGTTGAGGGCGATGGAGGACGTGTTGCCCTCGATGAACCAGAGGAGCTC 86896 >seq67 Length=351041 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| ||||| || || || | | ||||||| | || || | || | Sbjct 84632 AATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGAT 84691 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| ||| || | || ||| ||| | Sbjct 84692 GTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTC 84751 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| || ||||||| |||||||| ||||||||||||| || Sbjct 84752 GCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 84811 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 84812 AAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 84847 Score = 113 bits (124), Expect = 5e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGG 147164 ||||| |||||| | |||||||| |||||||| |||||| | ||| |||||| Sbjct 84924 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGG 84983 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||||| || | || | || | | ||||| | || || | ||||| Sbjct 84984 -TTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAAT 85042 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||||||||| ||||||| ||| | || | || | |||||||||| ||| Sbjct 85043 CTCGGCCAGCTGGTCGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGC 85102 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||||| |||||| || ||||| || || |||||||| ||| || | ||| | Sbjct 85103 GCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGT 85162 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| | | | ||| |||||| |||| || | | |||||||||| || || Sbjct 85163 CAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGAC 85222 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | || ||| | | ||| |||| |||| |||||||||||| ||||| Sbjct 85223 GTCGTTGAGGGCGATGGAGGACGTGTTGCCCTCGATGAACCAGAGGAGCTC 85273 >seq62 Length=351717 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| ||||| || || || | | ||||||| | || || | || | Sbjct 84632 AATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGAT 84691 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| ||| || | || ||| ||| | Sbjct 84692 GTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTC 84751 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| || ||||||| |||||||| ||||||||||||| || Sbjct 84752 GCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 84811 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 84812 AAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 84847 Score = 113 bits (124), Expect = 5e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGG 147164 ||||| |||||| | |||||||| |||||||| |||||| | ||| |||||| Sbjct 84924 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGG 84983 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||||| || | || | || | | ||||| | || || | ||||| Sbjct 84984 -TTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAAT 85042 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||||||||| ||||||| ||| | || | || | |||||||||| ||| Sbjct 85043 CTCGGCCAGCTGGTCGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGC 85102 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||||| |||||| || ||||| || || |||||||| ||| || | ||| | Sbjct 85103 GCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGT 85162 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| | | | ||| |||||| |||| || | | |||||||||| || || Sbjct 85163 CAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGAC 85222 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | || ||| | | ||| |||| |||| |||||||||||| ||||| Sbjct 85223 GTCGTTGAGGGCGATGGAGGACGTGTTGCCCTCGATGAACCAGAGGAGCTC 85273 >seq3 Length=1872122 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| ||||| || || || | | ||||||| | || || | || | Sbjct 1605797 AATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGAT 1605856 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| ||| || | || ||| ||| | Sbjct 1605857 GTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTC 1605916 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| || ||||||| |||||||| ||||||||||||| || Sbjct 1605917 GCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 1605976 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 1605977 AAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 1606012 Score = 113 bits (124), Expect = 5e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC-CGCGGG 147164 ||||| |||||| | |||||||| |||||||| |||||| | ||| |||||| Sbjct 1606089 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGG 1606148 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||||| || | || | || | | ||||| | || || | ||||| Sbjct 1606149 -TTCCAGGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAAT 1606207 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||||||||| ||||||| ||| | || | || | |||||||||| ||| Sbjct 1606208 CTCGGCCAGCTGGTCGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGC 1606267 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||||| |||||| || ||||| || || |||||||| ||| || | ||| | Sbjct 1606268 GCCAAAGTGCCGCCACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGT 1606327 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| | | | ||| |||||| |||| || | | |||||||||| || || Sbjct 1606328 CAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGAC 1606387 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | || ||| | | ||| |||| |||| |||||||||||| ||||| Sbjct 1606388 GTCGTTGAGGGCGATGGAGGACGTGTTGCCCTCGATGAACCAGAGGAGCTC 1606438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583486563160800