Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq141 246 4e-59 seq7 131 2e-24 >seq141 Length=465755 Score = 246 bits (272), Expect = 4e-59 Identities = 388/544 (71%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||| ||||||||||| ||| | || | Sbjct 372903 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATC 372845 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 372844 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 372785 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| || ||||| || ||||||||||| || Sbjct 372784 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAG 372726 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 372725 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 372666 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069 || || ||||||||||| || |||||||| || || |||||||||||| ||||| || | Sbjct 372665 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 372606 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | || | ||||||| |||||| || || | || | | | || |||| Sbjct 372605 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAGG 372548 Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||||| ||||| | ||| | ||||||| |||| || Sbjct 372547 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 372493 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 || | |||||||| ||||||||| ||||| ||| || ||| | ||||||| || Sbjct 372492 GGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTG 372433 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 |||||||||||| || |||||||| |||| | |||| |||||| | ||| ||| | Sbjct 372432 GCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCGTG 372374 Query 1456306 ACGA 1456309 |||| Sbjct 372373 ACGA 372370 Score = 96.9 bits (106), Expect = 5e-14 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1456587 TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCT 1456646 ||||||||||| ||| | || ||| |||||||| || ||| || |||||||| ||||| Sbjct 372229 TCGGCATGAACTCCAAC-CTGATGAAGCAGTACATCGAGTTT-GTTGCCGACCGTCTGCT 372172 Query 1456647 CGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGT 1456706 | || |||||| || ||||| |||| | | |||||||| || | |||||| Sbjct 372171 TGTCGCTCTCGGCAACG-AGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGA 372113 Query 1456707 TGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGG 1456765 || || || | ||||||||||||||||||||| ||||| | ||| ||| |||| Sbjct 372112 ACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAGAAGG 372053 Query 1456766 CCGGCGTCA 1456774 | || |||| Sbjct 372052 CTGGTGTCA 372044 >seq7 Length=2436850 Score = 131 bits (144), Expect = 2e-24 Identities = 338/507 (67%), Gaps = 25/507 (5%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||||| |||||| | ||||| | ||| |||||||| |||| ||||| Sbjct 486238 GCACAAGGAGGAGCTCGACTCCGCCATTGTCTACGATCGAGACTTCAACTACCAATACTT 486297 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCG 259796 || | ||| ||| || || ||||| | ||| || || | ||||| | Sbjct 486298 CGGCTTCAAGACTTTGGAGCGATCATACCTC-CTGAAGCTTGATGGCAAGATTGTTG--- 486353 Query 259797 AGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCG 259856 ||||||| ||| | ||| | ||||| || | ||||| | |||| || | || Sbjct 486354 AGCGGCCACAGCACATGATTATGCGAGTGTCTGTTGGCA--TCTGGG------GA-GACG 486404 Query 259857 ACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACC 259915 ||| || ||| || || | || ||| | |||||| |||| ||| |||||| Sbjct 486405 ACATTG------AGCGTGTCCTGGAGACATACAACCTCATGTCT-AGCAAGTTCTTCACC 486457 Query 259916 TCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975 || | ||||| || || ||||| || || |||| | ||| || || ||||| Sbjct 486458 CATGCCTCCCCCACCCTGTTCAATGCTGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTC 486517 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | |||||||||| |||| || ||||| ||||||||||| || ||| || || Sbjct 486518 TTGGTCGACATGAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACATGTGCC 486577 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | || |||||| ||| || || ||||| || || ||| | || ||| | ||| Sbjct 486578 ATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGC 486637 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 | ||| | || ||||||||||| |||||||| || | ||||||||||| || || Sbjct 486638 TCTTACATTGCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTCTTC 486697 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || | || ||||||||| Sbjct 486698 AACAACACTGCCAGATATGTCGACCAG 486724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177792198987914