Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq131 152 5e-32 seq128 140 3e-28 seq15 114 1e-20 seq92 102 7e-17 seq77 102 7e-17 seq67 102 7e-17 seq62 102 7e-17 seq3 102 7e-17 >seq131 Length=1298602 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||||| || |||||||| ||| | Sbjct 570455 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 570514 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||||||||||||| ||||| ||||| ||||||||||| | |||| Sbjct 570515 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 570574 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||||| ||| | |||| | | |||||| |||||||| Sbjct 570575 ATGCCTTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGATTCCAC 570633 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || |||| ||| || || || |||||||| Sbjct 570634 CTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| ||| |||||| || |||| || |||||||| || Sbjct 570713 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCA 570772 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | |||||||| |||| |||| | |||||||||| |||||| ||| Sbjct 570773 GCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGACTTG 570832 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||| ||||| ||||||| ||||| || || || ||||| || Sbjct 570833 ACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTC 570892 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 570893 TTGACGAAGATCTGCAT 570909 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||||| | || || || ||||| || || || Sbjct 571232 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 571291 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||||| |||||| ||||| | | Sbjct 571292 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTCACATT 571351 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || || ||||| | ||||| || || || || | || || || Sbjct 571352 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 571411 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 571412 GAAGATTTGCAT 571423 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | |||||| | || || ||||||||||| || || Sbjct 570947 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAG 571006 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||| | ||| | | |||||||||| |||||| Sbjct 571007 ATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 571053 >seq128 Length=1745744 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || | ||| |||||| || |||||||| |||| Sbjct 1611317 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1611376 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || |||||||||||||| || || ||||| ||||||||||||| ||| Sbjct 1611377 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1611436 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| || |||||| Sbjct 1611437 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1611496 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || ||||| | || || || || |||||||| Sbjct 1611497 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 >seq15 Length=381730 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || ||||| | Sbjct 261631 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 261690 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||||| |||| || |||||||||| |||||| ||| | | | Sbjct 261691 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 261750 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | ||||| || || ||||||| || ||||| | Sbjct 261751 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 261810 Query 35727 A 35727 | Sbjct 261811 A 261811 >seq92 Length=352844 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||| ||| || |||||| | ||| |||||| | |||| |||||||||||||| Sbjct 5785 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 5726 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| || |||||||| | |||| |||||| ||||| ||||| ||| Sbjct 5725 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTG 5666 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| |||||||||| | ||||| || || | || | ||| Sbjct 5665 A-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 5607 Query 35719 TTTCACAAATATCTGCAT 35736 || || || ||||| || Sbjct 5606 CTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||| ||| || |||||| | ||| |||||| | |||| |||||||||||||| Sbjct 348683 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 348742 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| || |||||||| | |||| |||||| ||||| ||||| ||| Sbjct 348743 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTG 348802 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| |||||||||| | ||||| || || | || | ||| Sbjct 348803 A-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 348861 Query 35719 TTTCACAAATATCTGCAT 35736 || || || ||||| || Sbjct 348862 CTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||| ||| || |||||| | ||| |||||| | |||| |||||||||||||| Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 347119 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| || |||||||| | |||| |||||| ||||| ||||| ||| Sbjct 347120 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTG 347179 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| |||||||||| | ||||| || || | || | ||| Sbjct 347180 A-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 35719 TTTCACAAATATCTGCAT 35736 || || || ||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||| ||| || |||||| | ||| |||||| | |||| |||||||||||||| Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 347119 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| || |||||||| | |||| |||||| ||||| ||||| ||| Sbjct 347120 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTG 347179 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| |||||||||| | ||||| || || | || | ||| Sbjct 347180 A-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 35719 TTTCACAAATATCTGCAT 35736 || || || ||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||| ||| || |||||| | ||| |||||| | |||| |||||||||||||| Sbjct 1868225 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 1868284 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| || |||||||| | |||| |||||| ||||| ||||| ||| Sbjct 1868285 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTG 1868344 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| |||||||||| | ||||| || || | || | ||| Sbjct 1868345 A-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 1868403 Query 35719 TTTCACAAATATCTGCAT 35736 || || || ||||| || Sbjct 1868404 CTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792489920760