Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 138 2e-27 >seq7 Length=2436850 Score = 138 bits (152), Expect = 2e-27 Identities = 404/612 (66%), Gaps = 14/612 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||||| |||||||| || || || Sbjct 487129 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 487070 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || |||||||||| |||| | ||| | || || | ||| | | |||| || Sbjct 487069 GGGGTTACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCACGGAT 487010 Query 69471 TACGGTCTTGTAACG-CTTCTCT--TTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 ||||||| || | || || || || || || | || | |||| |||||||| Sbjct 487009 ---GGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAGAGCC--TCGAATTC- 486956 Query 69526 TCTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 ||| ||| | || ||| | | ||||| ||||| || || ||||| | | ||| | Sbjct 486955 -CTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCA 486897 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 | | || ||| || ||||| || |||||||||||||| ||||| | || | || | Sbjct 486896 AGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGC 486837 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | | ||||| || || || || ||||| || || || | | || | Sbjct 486836 GAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGG 486777 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||| || || || || || || | | | || || || || || || ||||| || | Sbjct 486776 CGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGA 486717 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 |||||||||||||| || |||||| ||||| ||||||||||| || || |||| | Sbjct 486716 CATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGT 486657 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || |||| ||| ||| || | || || || | | || || || | Sbjct 486656 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCAC 486597 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | ||||| || || || | ||||| |||| |||||||| |||||||| ||||||| Sbjct 486596 CAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTAT 486537 Query 69944 CATCTATCATGT 69955 | || |||||| Sbjct 486536 CGTCCTTCATGT 486525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907108487080