Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq141 140 1e-27 >seq141 Length=465755 Score = 140 bits (154), Expect = 1e-27 Identities = 363/540 (67%), Gaps = 19/540 (4%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| || ||||||||||| |||||||| || ||| |||||| | || || Sbjct 372869 TTCTGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTG 372810 Query 443397 TCTAGCCATGAACGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| || || | ||||| | |||| ||||||||||||| | || Sbjct 372809 ---AACGATGA-CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGA 372754 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGC 443512 ||| || ||| ||||| ||||| ||| ||| || ||| | | ||||||| Sbjct 372753 CGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC 372694 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 || | |||||||| ||||| | ||||||||||| ||| ||||| |||| | Sbjct 372693 TCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCT 372634 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCA 443631 | | ||| | || ||| || || || || ||||| | | ||| || || || Sbjct 372633 GCTCATCGACAC-CTACATC--AAGGAGAACAGCCAGCGCAGCTACCTCTTCAACGC-CA 372578 Query 443632 T---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 | ||||| || ||||| | ||| | |||||| | ||||| || | || Sbjct 372577 TTGAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAG-GAC 372519 Query 443689 AAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || | ||| | || | | |||| || || || ||||| | ||||| || | || || Sbjct 372518 AAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTC 372459 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 ||||| ||||| ||||||||||||||| | || ||||| || || |||| |||||||| Sbjct 372458 AGCGGT-GCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGAC 372400 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 |||| ||||| || ||| ||| ||||||||| | || |||||| ||||| || || Sbjct 372399 CTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCT 372340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588331990940665