Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 246 4e-60 seq141 114 2e-20 >seq7 Length=2436850 Score = 246 bits (272), Expect = 4e-60 Identities = 1009/1563 (65%), Gaps = 57/1563 (4%) Strand=Plus/Minus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609 ||||||||| || ||||| | | ||| ||||| ||||| || | ||| || ||| Sbjct 487894 CTTGATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCATTC----TCAGCAATGA 487839 Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 | | |||||| | | ||||||||| || | | ||||| |||| || Sbjct 487838 TACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGG 487779 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||||| ||||| || || ||| | || | |||||||||| | ||||| | Sbjct 487778 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 487719 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || || |||| || || | || ||| |||||||| || || | Sbjct 487718 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 487659 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | | ||||| || ||| | ||||||||| | |||||||| ||||| || Sbjct 487658 GGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 487599 Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || || || || | |||||||||| || || || | || | ||| || || Sbjct 487598 ACAGGTCAGAG-GGCTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 487541 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCA 110963 || |||| || | ||| |||| ||| | | | || | || | || ||||| | Sbjct 487540 TGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCAA 487482 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| || || || ||||| |||||||| | |||| || || || || | Sbjct 487481 GGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACT 487422 Query 111024 CAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 |||| |||| || |||| | || | || || ||||| || ||||| | ||| Sbjct 487421 CAAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACACC 487367 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 ||| |||| ||| ||||| || || || || || || || || || || Sbjct 487366 AATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATC 487307 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||||| ||| || || | ||| | ||| |||| |||||| || || | | | || Sbjct 487306 AATGATCTTGTTAAGGTTGCGGACAACCACCTTGGTGACTTCATGGAGCTTCTTAAAGTC 487247 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || | | | |||||| || ||||| | || ||||| |||||||| Sbjct 487246 GTAGCAGCCTTCGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAAC 487187 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | ||| || || || | |||||| || || Sbjct 487186 AGCAACCTCATCTGGGGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGAT 487127 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| Sbjct 487126 GGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGG 487067 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | || || || ||||| | || || || | | ||| | | || | | || | Sbjct 487066 GTTACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCACGG----A 487011 Query 111438 TGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 ||| ||| | ||||||||| ||||||||| || || || || || ||||| Sbjct 487010 TGGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCCTC-G 486952 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| || ||| | || || || || || || || || | || | ||| | ||| Sbjct 486951 CCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAG 486895 Query 111553 TTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCT 111609 ||| |||||| ||||||||||| || || |||||||| || | | | || || || | Sbjct 486894 TTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCGCG 486836 Query 111610 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 111669 | || ||||||| | || ||||| || | |||||||| || | || || || Sbjct 486835 AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGC 486776 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATT 111723 |||||| ||||| || |||| || | | || ||||| ||| | || | Sbjct 486775 GTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTC 486719 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 ||||| | || ||| ||| || || |||||||| ||||||||||| | || ||| Sbjct 486718 GACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACC 486659 Query 111784 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 || || || ||| ||| |||| | | |||| || || || ||||| Sbjct 486658 GTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACC 486599 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 |||||| ||| || || ||||| | | ||||| |||||||||| | || Sbjct 486598 ACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCT 486539 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCAT 111962 || ||||| || ||| | |||||| ||||| ||| || || || |||||||||| Sbjct 486538 ATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCAGCAT 486480 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTC 112020 |||| ||||| || | || || ||| | | |||| ||||| || ||||||||| Sbjct 486479 TGAACAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTC 486422 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 || |||| |||||||| || || |||||| | | || ||||| | ||||| ||| Sbjct 486421 CAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTG 486362 Query 112081 TGG 112083 ||| Sbjct 486361 TGG 486359 >seq141 Length=465755 Score = 114 bits (126), Expect = 2e-20 Identities = 347/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| || || || || || || || || ||| ||||| Sbjct 372348 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 372407 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 372408 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 372467 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | | Sbjct 372468 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGA 372526 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || || ||||| | |||||||| || || || | || | ||||| | | Sbjct 372527 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGA 372586 Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 | | | ||| | | | | || ||||| ||||| |||| || | || || || Sbjct 372587 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 372644 Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| || | | | ||| ||| | || | ||||||| | || || ||| | Sbjct 372645 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 372703 Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 |||| ||||| |||| || | | | ||||| ||||| || || || | Sbjct 372704 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCG 372762 Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129 |||||||| |||||||||| ||||| | ||| || | || |||| || | ||| Sbjct 372763 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTC 372822 Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 372823 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 372866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030453471200