Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 223 4e-53 seq141 132 6e-26 >seq7 Length=2436850 Score = 223 bits (246), Expect = 4e-53 Identities = 1169/1843 (63%), Gaps = 51/1843 (3%) Strand=Plus/Minus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | |||| ||||| || ||| ||||| | || ||||||||||| || ||| Sbjct 488121 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 488062 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| || |||||||| || | ||||| || | |||| | || || Sbjct 488061 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 488002 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 488001 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 487942 Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 | | || || || ||| | ||||| || ||| |||| ||| ||| ||||| Sbjct 487941 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 487886 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093 || ||||| | ||| || || ||||| ||| | | | || | | |||||| Sbjct 487885 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCATTCTCAGCAATGATACGGTTCTTCAT 487826 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150 | | |||||||| || | | || |||| |||| || |||||||| Sbjct 487825 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAAC 487769 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || || ||| |||| | | ||||| |||| ||||| ||||| ||||| Sbjct 487768 CTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCA 487709 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||| ||||| |||| || |||| || ||| || ||||| || || | ||| | ||| Sbjct 487708 CTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCT 487649 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGC 118328 ||| || ||| | ||| | || | |||||||| | |||||| || | | | || Sbjct 487648 GTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGA 487589 Query 118329 TTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 118388 | || | | |||||| || || |||||||| || | ||| || || ||||||| Sbjct 487588 G--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 487531 Query 118389 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 118448 |||| || || || ||||| |||| || | || ||||| ||||| || || Sbjct 487530 AATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGG 487471 Query 118449 TACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAG 118507 || || || ||||| || | |||| || | | ||||| || ||||| | | Sbjct 487470 TAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCAT 487412 Query 118508 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 || || || | || || ||||| |||||||| | ||||| || || || | Sbjct 487411 GCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCG 487352 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || || || || || || || || || ||| || | | | || || Sbjct 487351 CATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAG 487292 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 || | || ||||| |||| |||||| ||||| | | || | | || | Sbjct 487291 GTTGCGGACAACCACCTTGGTGACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTT 487232 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | | |||||| ||| ||||| | || |||| || || |||| |||||| Sbjct 487231 GTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGG 487172 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| ||||| || ||||| | ||| || || ||||| |||| |||||| Sbjct 487171 GGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 487112 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || ||| ||| || ||||||||||| |||||| | || | || || || || Sbjct 487111 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGT 487052 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTGG---CT 118922 |||| | || || | | ||| | || ||| |||| | ||| ||| | Sbjct 487051 CTGGGCTTCCAGGATGGAATACCACA-----GCTTCTGAGCACGGATGGTCTTGCGACCA 486997 Query 118923 CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 118982 || ||||| | ||||||||| || || || || || || || || | || | Sbjct 486996 CGTCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCA 486937 Query 118983 AGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAACCCGC 119039 || || || || || |||| || | ||| | ||| | ||| || |||||| ||| Sbjct 486936 AGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGC 486880 Query 119040 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 119099 ||||||||||| || || |||||||| || ||| | || ||| ||| | ||||| Sbjct 486879 TTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCC 486820 Query 119100 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 119159 | || || || || | || | || || | || || |||||||| || || ||| Sbjct 486819 TTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGG 486760 Query 119160 TACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTG 119213 || | || | | || | |||| |||| |||||| ||||| || |||||| Sbjct 486759 TAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTG 486703 Query 119214 GCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 ||| || || |||||||| ||||| ||||| | ||| || || || || ||| Sbjct 486702 TTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATG 486643 Query 119274 CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 119333 ||| |||| | || ||||| || || || ||||| || ||| ||| || Sbjct 486642 TAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAA 486583 Query 119334 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 119393 || || || | | ||| || | ||||| || || || || |||| | || Sbjct 486582 ATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCG 486523 Query 119394 ATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGT 119452 | | |||||| |||| || |||||| || |||||||| ||||| || || || | Sbjct 486522 ACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGA 486464 Query 119453 CGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATG 119510 || ||| ||| | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 486463 GGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATG 486406 Query 119511 TCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGG 119570 || || || || || | || || ||||||| ||||| || || || | | Sbjct 486405 TCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATC 486346 Query 119571 ATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 | ||||| ||| || ||||||| |||||| ||||||| Sbjct 486345 TTGCCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 486303 >seq141 Length=465755 Score = 132 bits (146), Expect = 6e-26 Identities = 349/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||||||||||||| |||||||| || || || ||| |||||| Sbjct 372348 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 372407 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 372408 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 372467 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || || || |||| || |||| |||||||| | ||| | | Sbjct 372468 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGAT 372527 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| || ||||| | ||||| || ||| || || | ||||| || || | || Sbjct 372528 CCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAA 372587 Query 130255 GA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 || || || | | ||| | || |||||||| | || ||||| || || || Sbjct 372588 GAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 372645 Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 ||| |||| | | ||| || | ||| | ||||||| | || || ||| || Sbjct 372646 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 372704 Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| ||||| | || || | | | ||||| ||||| || || || | | Sbjct 372705 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGG 372763 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487 |||| || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 372764 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 372823 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| || ||||| | ||| || || ||||| Sbjct 372824 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 372866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433677103320