Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 266 4e-66 seq141 149 7e-31 seq9 100 3e-16 >seq7 Length=2436850 Score = 266 bits (294), Expect = 4e-66 Identities = 935/1436 (65%), Gaps = 37/1436 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||| | | || || || || |||||||| |||| Sbjct 486359 CCACAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 486418 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||||||| || ||||| |||| | | ||| || || | || ||||| | Sbjct 486419 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACCCATGCCTCCCCCACCCTGT 486476 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || |||| ||||| |||||| | ||| || ||||| | Sbjct 486477 TCAATGCTGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACG 486536 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | || | |||||||||| ||||| | | ||||| || || ||| ||||| Sbjct 486537 ATAGCATTGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTG 486596 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | |||| ||| ||| || || | Sbjct 486597 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 486656 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||||||||| |||||||| || || ||| ||| || | |||| Sbjct 486657 ACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATG 486716 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | | || |||| || ||||| |||| Sbjct 486717 TCGACCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCCTGGC 486773 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691 |||| || || | || |||||||| | || ||||| || | || |||| |||| Sbjct 486774 ACGCCGACGTCTTTGAATTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 486833 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| | Sbjct 486834 CT--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 486891 Query 104752 GAG--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807 || ||| | ||| | ||| | || || || || || ||||| || | || ||| Sbjct 486892 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTA 486948 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 ||| ||||| || || || || || ||||||||| | || || || | | | || Sbjct 486949 TGGC-GAGGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAA 487005 Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | ||| | || | ||||| | | || || | | || ||||| ||||||| Sbjct 487006 GACCATCCGTGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAAACTGGTA 487064 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || ||||| |||| ||||| || || ||||| |||| Sbjct 487065 ACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 487124 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| || ||||| ||||| || || || | || | | | ||||||| | Sbjct 487125 CCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCCCCAGATGAGGTTG 487184 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104 |||| || ||| | || || | || ||||| ||||| || | | | || ||| | Sbjct 487185 CTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTG 487242 Query 105105 TT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | || | | | || ||||| ||||| || || || | ||||| |||| | Sbjct 487243 CTACGACTTTAAGAAGCTCCATGAAGTCACCAAGGTGGTTGTCCGCAACCTTAACAAGAT 487302 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||||| || ||||| || || || || || || ||| | ||||| || Sbjct 487303 CATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACC 487362 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 105281 |||||| | ||||| |||||||| || || | ||| || | || ||| | |||| Sbjct 487363 CATTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTG 487421 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || ||| || | | || || || ||||||||||| || || || || | Sbjct 487422 AGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGCCC 487481 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||||||| | ||| | || |||| || ||||| || ||| | || |||| || | Sbjct 487482 TTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATCAC 487541 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 | || || | || | || ||||| || |||||||| | || || | | | Sbjct 487542 CTGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGG 487601 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| | |||||||| | ||||||||| | ||| || ||||| | ||| | | Sbjct 487602 AGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCG 487661 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || |||||||| ||| || | || || |||| || || || ||||| || |||| Sbjct 487662 CCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 487721 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 |||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 487722 ACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 487777 >seq141 Length=465755 Score = 149 bits (164), Expect = 7e-31 Identities = 354/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 372866 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 372807 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||| | || || || ||| Sbjct 372806 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATT 372747 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 372746 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 372688 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 372687 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 372629 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 372628 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 372571 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || || | ||||| || || ||||| || |||||| | | |||| | | Sbjct 372570 CATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 372511 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 372510 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 372452 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | || | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 372451 CTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 372392 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| |||||| || ||||| Sbjct 372391 ACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 372349 >seq9 Length=1761156 Score = 100 bits (110), Expect = 3e-16 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || || || || |||||||||| |||||| ||| ||| | || | | | || | Sbjct 1107170 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 1107229 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || | |||||| | ||||||||||||||||||||||| || | | || || Sbjct 1107230 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 1107289 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 1107290 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 1107348 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939 ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 1107349 TCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT- 1107407 Query 9940 TCTCTCAGGTTGCTTAAGAAA 9960 ||||||| ||||| || || Sbjct 1107408 --TCTCAGGCTGCTTTAGGAA 1107426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259363720280