Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq131 138 3e-27 seq5 127 6e-24 seq128 114 4e-20 seq21 98.7 3e-15 seq92 87.8 5e-12 seq77 87.8 5e-12 seq67 87.8 5e-12 seq62 87.8 5e-12 seq3 87.8 5e-12 >seq131 Length=1298602 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| ||||| || ||| || ||||| || || || Sbjct 570679 CATACCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTC 570738 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || || ||||| || || ||||||||||| ||||| |||||||| || Sbjct 570739 GCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGG 570798 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | || |||| ||| Sbjct 570799 GGGAATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTC 570858 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | ||||| ||||| | || || || || |||||||| Sbjct 570859 AACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 571193 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 571252 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 571253 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 571312 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || |||| || ||||| || || | ||| || | || Sbjct 571313 AGGAATGCCCTCCTTGTCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTC 571372 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 571373 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 571423 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| || || || || || || || || Sbjct 570907 CATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTC 570966 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 570967 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGG 571026 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | |||||||| || Sbjct 571027 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTC 571086 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | |||||||| || || || || || Sbjct 571087 CACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 571125 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | ||||| | || || || ||| || || || || | Sbjct 570447 TTTACTGGCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGT 570506 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || || || ||||||||||| | || ||||| | Sbjct 570507 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 570566 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || | || || || || || | || || | Sbjct 570567 CAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 570626 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | |||||| || || || || || || ||||||||||| Sbjct 570627 ATTCCACCTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 >seq5 Length=253754 Score = 127 bits (140), Expect = 6e-24 Identities = 222/322 (69%), Gaps = 1/322 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || ||||| || || || ||||||| || || || || || Sbjct 235566 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAAGCTACCAAGGACGCC 235507 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| ||||| || || Sbjct 235506 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATC 235447 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 235446 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 235387 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 235386 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 235327 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| |||||||| || || || || || || ||| Sbjct 235326 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTTGTCAACCACTTT 235267 Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931 ||||| ||||||||||| |||| Sbjct 235266 GTTAACGAATTTAAGCG-CAAG 235246 >seq128 Length=1745744 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || || Sbjct 1611316 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1611375 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 1611376 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 1611435 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 1611436 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 1611495 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 1611496 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 >seq21 Length=197681 Score = 98.7 bits (108), Expect = 3e-15 Identities = 199/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||||||| | | | | |||||| | ||||| | | |||| |||||||||||| Sbjct 46516 ATCATATTGAGCGTTGAGATCTTCCAGAGCTTTGACCAAACGTCTCTGAATATAACCAGT 46457 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | | || || || ||||||||||| | ||| |||||||| |||| || |||||||| Sbjct 46456 CTCAGCTGTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAA 46397 Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362 ||||| | || || || |||| | | ||| |||||| || || | || | || Sbjct 46396 GAATTCGGAGGGTGTCAGACCACGGAGGTAAGAATTCTCAACGAAGCCACGAGCTTCGGG 46337 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 || | ||||| || || |||| || | || || | | || || ||||||| || Sbjct 46336 TGAGTAATCATCCTTGGTGAAATGCGGGAGAGTTCGGTATTTGAAGCCGAATGGAATACG 46277 Query 378423 TTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 ||||| |||||| |||| || | |||| || | |||||||| ||| || Sbjct 46276 CTTTCCTTCAACAATCTGCTGTCCGACAAGCGCCG---TCATTTGAGAAATGTT 46226 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491 ||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || | Sbjct 47281 CAGAT--TGAGAAT-TTCCTTGAGT-CGAGGCACACCGAGTGTGACGTTC---TTGGAAG 47229 Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551 ||||| ||||||||||| || || || || | || || | |||||||||||| |||| Sbjct 47228 ACACACCGGCAAAGTGGAAGGTGTTCAGCGTCATCTGCGTGGCGGGCTCACCAATGGACT 47169 Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 | || |||| || ||||||||||| || || || |||| Sbjct 47168 GGGCAGCAAGGACACCAACCATTTCACCGGGGTTAACAA 47130 >seq92 Length=352844 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || ||||| || || || ||||||||||| | |||||||| ||||| ||||| | ||| Sbjct 5746 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 5687 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || | || || || || || | || || | ||| || | || || Sbjct 5686 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 5627 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| | ||| || || || || |||||||| || Sbjct 5626 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || ||||| || || || ||||||||||| | |||||||| ||||| ||||| | ||| Sbjct 348722 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 348781 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || | || || || || || | || || | ||| || | || || Sbjct 348782 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 348841 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| | ||| || || || || |||||||| || Sbjct 348842 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || ||||| || || || ||||||||||| | |||||||| ||||| ||||| | ||| Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || | || || || || || | || || | ||| || | || || Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| | ||| || || || || |||||||| || Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || ||||| || || || ||||||||||| | |||||||| ||||| ||||| | ||| Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || | || || || || || | || || | ||| || | || || Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| | ||| || || || || |||||||| || Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || ||||| || || || ||||||||||| | |||||||| ||||| ||||| | ||| Sbjct 1868264 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 1868323 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || || ||||| || | || || || || || | || || | ||| || | || || Sbjct 1868324 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 1868383 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| | ||| || || || || |||||||| || Sbjct 1868384 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250575403191