Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 223 4e-53 seq149 93.3 5e-14 >seq7 Length=2436850 Score = 223 bits (246), Expect = 4e-53 Identities = 480/712 (67%), Gaps = 12/712 (2%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | || Sbjct 486412 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACCCATGCCTCCCC 486468 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 ||||||||||| |||||||| || | ||| |||| |||||| |||| | || Sbjct 486469 CACCCTGTTCAATGCTGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACAT 486528 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| || || || || ||||| || || || ||| |||||| || ||||| Sbjct 486529 GAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAA 486588 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467 | | | ||||||||||| | || || | || ||||||| | |||| | || Sbjct 486589 GATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATT 486646 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | || | || || | || ||||| || |||||||||||||| Sbjct 486647 GCTGGCACCAACGGTACCTCCAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACT 486706 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 ||| | || ||| ||||||||||| ||||| || | || ||||||||||||||| Sbjct 486707 GCCAGATATGTCGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAG 486766 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||||||| | | || || || || || || ||| || || | |||||| Sbjct 486767 CCCTGGCACGCCGACGTCTTTGAATTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAG 486826 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| || ||| |||| ||||| |||||||| || ||||||||| | || Sbjct 486827 GTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTT 486886 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGT 53766 |||||| || ||| ||| || |||||||| ||||| ||||| |||| | | | || Sbjct 486887 GAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTG- 486945 Query 53767 CTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAA 53826 ||| || ||||| || | | ||||| || ||||| |||| || || Sbjct 486946 CTATGGCGAGGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGACGTGGTCGCAA 487005 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || || || | || | ||| || | ||||| | |||| || || || | Sbjct 487006 GACCATCCGTGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAAACTGGTAA 487065 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 || | |||| |||||||||| | |||| |||||||||||||||||| Sbjct 487066 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAAC 487117 Score = 118 bits (130), Expect = 1e-21 Identities = 302/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||| | || || |||||||| || ||| | ||||| |||||||| Sbjct 487643 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAAC 487702 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || ||| || || ||| Sbjct 487703 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 487762 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | | ||| ||| Sbjct 487763 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 487820 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716 | || |||| || || |||| ||| || ||| | ||||| || | Sbjct 487821 ATGCCATGAAGAACCGTATCATTGCTGAGAATGGC---TCCATTCAGAACATCCCCAACA 487877 Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | | | |||||| ||||| ||| || ||||||||| | ||| | | | Sbjct 487878 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 487934 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| |||||||||||||| | ||| || ||||||||||| ||||||||| Sbjct 487935 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 487994 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || | || || ||| |||| | | | |||||||| || |||||| | Sbjct 487995 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 488054 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| || |||||||| ||||| || Sbjct 488055 GTCTCAAGACCGGCATGTACTACCTGCGTAC 488085 >seq149 Length=1327933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/420 (65%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || || || ||||| |||| || | ||| |||| | || || |||| | Sbjct 501912 CCCGTGCCAATACCATCGGCACCATTGATGAGCACCATTGGCAGGACTGGAGCATAAATC 501971 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||||| | ||| | ||| || || | | || |||| | || ||| | ||| Sbjct 501972 TCCGGCTCAATCTGCTTACCATCCTCGAACTGGTGGTTCAGGTTTGGATCGTC-GAGGGA 502030 Query 151996 TC-GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 ||| || || | | ||| ||| || || ||| | || || | || || || Sbjct 502031 GGAGAAAATTGAGCGGGCAAACGGAGACAAGCGGGTAAAGGTATAACGAGGACTAGCAGC 502090 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| |||||| || || || | ||||| | || |||||| || | || | ||| Sbjct 502091 ATCAGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGAACATTTATGTT 502150 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| ||||| |||| || |||| | || || ||||||| |||||||| Sbjct 502151 GTTGGATCCCACAAAATCTTGGGCCAGTCCAATGATGGTTTGCTGCAGAGAGGCTTCACC 502210 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 |||||| || || ||| | | | || || || |||| || | | ||||| |||| | Sbjct 502211 GTGGTGGTAGGCAGTCAGTCCAGAGACATAACCAGCCAGCTCCACAACCTTTTCGTCCTT 502270 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || ||| |||||| ||| ||||| | |||||| ||||| || ||||| || || Sbjct 502271 GACCACGTTTCTCTTGAAACATGCGTAGAGCACCTTTCGCTGACCCGGCTTCAATCCATC 502330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214652480600