Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq131 176 1e-38 seq128 167 5e-36 seq15 129 1e-24 seq92 118 2e-21 seq77 118 2e-21 seq67 118 2e-21 seq62 118 2e-21 seq3 118 2e-21 >seq131 Length=1298602 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| |||||||| || || |||||||| || || | ||||| | ||||| Sbjct 570926 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 570985 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||||||||| | || ||||||||| Sbjct 570986 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 571045 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| ||||| || |||||||| ||||| ||| Sbjct 571046 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 571105 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| ||||| || Sbjct 571106 TTTCCAGTGAGGGTCTTGAC 571125 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || |||||||| || |||||||| || || | || || Sbjct 571202 ACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 571261 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| ||||| || || || || ||||||||||||| || Sbjct 571262 TCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCC 571321 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || |||||||| || || || |||||||| Sbjct 571322 CTCCTTGTCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAG 571381 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | ||||| Sbjct 571382 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 571423 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| || ||| ||| || |||||||| || || | ||||| Sbjct 570460 ACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG- 570518 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || |||||||||||||| || || ||||| | ||| || ||||||||||||| | Sbjct 570519 TGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGC 570578 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||| Sbjct 570579 CTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGA 570638 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || |||||||| || || | |||||| Sbjct 570639 GGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | |||||||||||||| ||| ||| || || ||||| || || | ||| || Sbjct 570688 ACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAA-GG 570746 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || || || ||||||||||| || |||||||| || || || || || |||| | Sbjct 570747 TGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATAC 570806 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||||||||| |||||| || || || ||||||||||| || ||||||||| | Sbjct 570807 CCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCA 570866 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | |||||| Sbjct 570867 ATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 >seq128 Length=1745744 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 1611332 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1611391 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || ||||| || |||| || ||||||||| Sbjct 1611392 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1611451 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||||||| Sbjct 1611452 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1611511 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 1611512 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1611546 >seq15 Length=381730 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | |||||| | ||||| || ||||||||||| || ||||| Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 261811 >seq92 Length=352844 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || |||||||||||||| || || ||||| | |||||| |||||||| |||| | || Sbjct 5746 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 5687 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| ||||||||||| || ||| |||| ||| ||| Sbjct 5686 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 5627 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||||||||| || || | ||| || Sbjct 5626 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || |||||||||||||| || || ||||| | |||||| |||||||| |||| | || Sbjct 348722 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 348781 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| ||||||||||| || ||| |||| ||| ||| Sbjct 348782 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 348841 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||||||||| || || | ||| || Sbjct 348842 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || |||||||||||||| || || ||||| | |||||| |||||||| |||| | || Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| ||||||||||| || ||| |||| ||| ||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||||||||| || || | ||| || Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || |||||||||||||| || || ||||| | |||||| |||||||| |||| | || Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| ||||||||||| || ||| |||| ||| ||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||||||||| || || | ||| || Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || |||||||||||||| || || ||||| | |||||| |||||||| |||| | || Sbjct 1868264 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 1868323 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| ||||||||||| || ||| |||| ||| ||| Sbjct 1868324 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 1868383 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||||||||| || || | ||| || Sbjct 1868384 ATTGTCTTGCGGGTGAGAGTCTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149074227905