Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq131 86.0 5e-12 >seq131 Length=1298602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTG 39140 || || |||||||| || || || || || ||| |||| || || |||| |||||||| Sbjct 570707 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCGTCCTCAAGCTG 570765 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| |||||||||||||| || | ||| | | ||| |||||| ||| | | Sbjct 570766 CTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCT 570824 Query 39201 CTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || |||| | | | || || || || || |||| ||||| | || || | Sbjct 570825 TTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGG 570884 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||| || || ||||| ||||| Sbjct 570885 TCAACGTCTTGACGAAGATCTGCAT 570909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544568687861