Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq128 154 4e-32 seq131 152 1e-31 seq15 116 9e-21 seq92 89.7 1e-12 seq77 89.7 1e-12 seq67 89.7 1e-12 seq62 89.7 1e-12 seq3 89.7 1e-12 >seq128 Length=1745744 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| || || || || |||| ||||| |||| | || Sbjct 1611322 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1611381 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| || Sbjct 1611382 TCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1611441 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 1611442 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1611501 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 1611502 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1611546 >seq131 Length=1298602 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || ||| || || || | ||||| ||| ||| || Sbjct 570688 ACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGT 570747 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| |||||||| || || || || || |||||||| Sbjct 570748 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACC 570807 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || |||||| ||| ||| |||||||||||||| | ||| || || || Sbjct 570808 CTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAA 570867 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 570868 TGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||||||||| || |||| ||||| |||| | |||| ||||| Sbjct 570926 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 570985 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| ||||| || ||||| || || ||||| |||||||| Sbjct 570986 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 571045 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | ||||| || | ||||| ||| Sbjct 571046 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 571105 Query 225682 TTGCCCGT 225689 || || || Sbjct 571106 TTTCCAGT 571113 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| || ||| || || |||| ||||| ||| ||| || Sbjct 570460 ACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT 570519 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 570520 GCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 570579 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| || ||||||||||| || | |||||| || | Sbjct 570580 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAG 570639 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| ||| || | ||| | ||||| Sbjct 570640 GGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 >seq15 Length=381730 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||| ||||| Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 261811 >seq92 Length=352844 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| | || Sbjct 5746 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 5687 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || ||||||||||| || | |||||| | | ||| Sbjct 5686 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 5627 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || | ||| || | ||| Sbjct 5626 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 5598 >seq77 Length=352580 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| | || Sbjct 348722 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 348781 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || ||||||||||| || | |||||| | | ||| Sbjct 348782 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 348841 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || | ||| || | ||| Sbjct 348842 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 348870 >seq67 Length=351041 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| | || Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || ||||||||||| || | |||||| | | ||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || | ||| || | ||| Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 347247 >seq62 Length=351717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| | || Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || ||||||||||| || | |||||| | | ||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || | ||| || | ||| Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 347247 >seq3 Length=1872122 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| | || Sbjct 1868264 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 1868323 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || ||||||||||| || | |||||| | | ||| Sbjct 1868324 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 1868383 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || | ||| || | ||| Sbjct 1868384 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 1868412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528189976718