Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq92 107 2e-18 seq77 107 2e-18 seq67 107 2e-18 seq62 107 2e-18 seq3 107 2e-18 >seq92 Length=352844 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT--CTCC 29587 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | || Sbjct 268285 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 268226 Query 29588 ACCCTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 |||| | || ||| || || || || | ||||| | ||| ||||| || | Sbjct 268225 TTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTT 268166 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| |||| || ||| Sbjct 268165 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCC 268106 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || |||| || |||||||| | ||||| || || || | |||||||||||||| Sbjct 268105 GGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTT 268046 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || || |||||||| | |||| ||||||||||||||| Sbjct 268045 GAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 267998 >seq77 Length=352580 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT--CTCC 29587 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | || Sbjct 86183 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 86242 Query 29588 ACCCTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 |||| | || ||| || || || || | ||||| | ||| ||||| || | Sbjct 86243 TTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTT 86302 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| |||| || ||| Sbjct 86303 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCC 86362 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || |||| || |||||||| | ||||| || || || | |||||||||||||| Sbjct 86363 GGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTT 86422 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || || |||||||| | |||| ||||||||||||||| Sbjct 86423 GAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 86470 >seq67 Length=351041 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT--CTCC 29587 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | || Sbjct 84560 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 84619 Query 29588 ACCCTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 |||| | || ||| || || || || | ||||| | ||| ||||| || | Sbjct 84620 TTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTT 84679 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| |||| || ||| Sbjct 84680 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCC 84739 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || |||| || |||||||| | ||||| || || || | |||||||||||||| Sbjct 84740 GGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTT 84799 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || || |||||||| | |||| ||||||||||||||| Sbjct 84800 GAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 84847 >seq62 Length=351717 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT--CTCC 29587 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | || Sbjct 84560 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 84619 Query 29588 ACCCTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 |||| | || ||| || || || || | ||||| | ||| ||||| || | Sbjct 84620 TTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTT 84679 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| |||| || ||| Sbjct 84680 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCC 84739 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || |||| || |||||||| | ||||| || || || | |||||||||||||| Sbjct 84740 GGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTT 84799 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || || |||||||| | |||| ||||||||||||||| Sbjct 84800 GAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 84847 >seq3 Length=1872122 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT--CTCC 29587 ||| ||||||||||||| | ||| ||||| |||| || | || | ||| | || Sbjct 1605725 GTGGGGGTCGTAGCCCTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATGCTGCCGCC 1605784 Query 29588 ACCCTCCTGTTTATCCTC-AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 |||| | || ||| || || || || | ||||| | ||| ||||| || | Sbjct 1605785 TTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTCTT 1605844 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || | |||||| | ||||||||| || ||||||| |||| || ||| Sbjct 1605845 GAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTAAGGCTTCC 1605904 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || |||| || |||||||| | ||||| || || || | |||||||||||||| Sbjct 1605905 GGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCGATGTT 1605964 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||||| | || || |||||||| | |||| ||||||||||||||| Sbjct 1605965 GAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCA 1606012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162224827542