Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq92 111 1e-19 seq77 111 1e-19 seq67 111 1e-19 seq62 111 1e-19 seq3 111 1e-19 >seq92 Length=352844 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 268188 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 268129 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 268128 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 268069 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 268068 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 268009 Query 27298 TAGAGCTGACA 27308 |||||||| || Sbjct 268008 TAGAGCTGGCA 267998 >seq77 Length=352580 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 86280 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 86339 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 86340 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 86399 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 86400 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 86459 Query 27298 TAGAGCTGACA 27308 |||||||| || Sbjct 86460 TAGAGCTGGCA 86470 >seq67 Length=351041 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 84836 Query 27298 TAGAGCTGACA 27308 |||||||| || Sbjct 84837 TAGAGCTGGCA 84847 >seq62 Length=351717 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 84836 Query 27298 TAGAGCTGACA 27308 |||||||| || Sbjct 84837 TAGAGCTGGCA 84847 >seq3 Length=1872122 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 1605822 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 1605881 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 1605882 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 1605941 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 1605942 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 1606001 Query 27298 TAGAGCTGACA 27308 |||||||| || Sbjct 1606002 TAGAGCTGGCA 1606012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506312836307