Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq128 174 3e-38 seq131 170 4e-37 seq15 152 1e-31 seq92 125 1e-23 seq77 125 1e-23 seq67 125 1e-23 seq62 125 1e-23 seq3 125 1e-23 >seq128 Length=1745744 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | || || || |||||||||||||| | Sbjct 1611316 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1611375 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || |||||||| || || ||||| || Sbjct 1611376 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 1611435 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 1611436 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 1611495 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 1611496 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1611546 >seq131 Length=1298602 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931 |||||||| || || || |||| || | ||||| || || |||||||||||||| | Sbjct 570455 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 570514 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || || || || || ||||||||||| || || |||||| || Sbjct 570515 AAG-GTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 570573 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| | || ||| | ||||| ||||| |||| ||| || Sbjct 570574 AATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 570633 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 570634 CTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 571196 ACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 571255 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || || || |||| ||| || |||||| || Sbjct 571256 CAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGG 571315 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| || || |||| ||||| Sbjct 571316 AATGCCCTCCTTGTCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGAC 571375 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 571376 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 571423 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AG 282930 ||||||||| || || || || || || | ||||| || || || ||||||||||| Sbjct 570682 ACCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCT 570741 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| || ||||| || || || || |||||||| | ||| || || || | Sbjct 570742 CAAG-GTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGG 570800 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||||| || ||||||| || || | ||||| ||||| || | ||| | Sbjct 570801 GAATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAA 570860 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 570861 CCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| ||| || |||||||||||||| | Sbjct 570910 ACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 570969 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||||| || || |||||| || Sbjct 570970 GAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGG 571029 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | ||||| || || || | || || Sbjct 571030 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCAC 571089 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 571090 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGA 571127 >seq15 Length=381730 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| |||||||||||||| || || || || ||||||||| Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 261811 >seq92 Length=352844 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| | || ||||||||| |||| |||| ||| | || || || || || || || Sbjct 5785 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTACC 5727 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||| ||||| |||||| ||||| | ||| ||||| || ||||| | || Sbjct 5726 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 5667 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||| || | ||| ||||| ||||| | || | ||| Sbjct 5666 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 5607 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || Sbjct 5606 CTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| | || ||||||||| |||| |||| ||| | || || || || || || || Sbjct 348683 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTACC 348741 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||| ||||| |||||| ||||| | ||| ||||| || ||||| | || Sbjct 348742 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 348801 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||| || | ||| ||||| ||||| | || | ||| Sbjct 348802 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 348861 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || Sbjct 348862 CTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| | || ||||||||| |||| |||| ||| | || || || || || || || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTACC 347118 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||| ||||| |||||| ||||| | ||| ||||| || ||||| | || Sbjct 347119 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 347178 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||| || | ||| ||||| ||||| | || | ||| Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| | || ||||||||| |||| |||| ||| | || || || || || || || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTACC 347118 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||| ||||| |||||| ||||| | ||| ||||| || ||||| | || Sbjct 347119 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 347178 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||| || | ||| ||||| ||||| | || | ||| Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| | || ||||||||| |||| |||| ||| | || || || || || || || Sbjct 1868225 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTACC 1868283 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||| ||||| |||||| ||||| | ||| ||||| || ||||| | || Sbjct 1868284 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 1868343 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||| || | ||| ||||| ||||| | || | ||| Sbjct 1868344 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 1868403 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| ||||| || Sbjct 1868404 CTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736557964838