Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq131 147 2e-30 seq128 141 7e-29 seq15 113 3e-20 seq92 89.7 4e-13 seq77 89.7 4e-13 seq67 89.7 4e-13 seq62 89.7 4e-13 seq3 89.7 4e-13 >seq131 Length=1298602 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||||||||||| ||||||||||| ||| | || | ||| |||| || Sbjct 570473 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT-GCGACCGTCTTC 570531 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || ||||||||||| |||||||| || | ||| | |||||||| ||| Sbjct 570532 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 570591 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||||| ||||||||||| | || || ||||| Sbjct 570592 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 570651 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| || ||||| Sbjct 570652 GCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 136 bits (150), Expect = 3e-27 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187 || |||||||| ||||||||||| || |||||||| ||| | || | ||| |||| || Sbjct 570701 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGT-GCGACCGTCCTC 570759 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 570760 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 570819 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | ||||| ||||||| || || ||| Sbjct 570820 AATCTTTGACTTGACATTGT--CGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTC 570877 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| |||||||| ||||| Sbjct 570878 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186 |||||||| || ||| |||||| ||||||||||| |||| ||||| || | || | Sbjct 571215 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT--CGGCCATCCT 571272 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || || |||| ||||||||| || | ||| | || ||||| ||| Sbjct 571273 CGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCT 571332 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || ||||| | || || |||| Sbjct 571333 GGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCT 571392 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || ||||||||||| ||||||||||||||| || Sbjct 571393 TGCCGGTGAGGGTCTTGACGAAGATTTGCATGGTG 571427 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||| ||||||||||| |||| ||| || | || || Sbjct 570929 ACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 570988 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 570989 AGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 571048 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || |||||||| | || || |||||| Sbjct 571049 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTT 571108 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 571109 CCAGTGAGGGTCTTGACGA 571127 >seq128 Length=1745744 Score = 141 bits (156), Expect = 7e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || || |||||| ||||||||||| |||| | Sbjct 1611317 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1611376 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || || |||||||| |||||||| || | || Sbjct 1611377 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1611436 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 1611437 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 1611494 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || |||||||| |||||||||||||| ||||| || ||||| Sbjct 1611495 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 >seq15 Length=381730 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| || ||||||| Sbjct 261631 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 261690 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 261691 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 261750 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 261751 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 261808 Query 44326 GAA 44328 ||| Sbjct 261809 GAA 261811 >seq92 Length=352844 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||||||| ||| ||||||||| | ||| | || || | |||| ||||||||||| || Sbjct 5785 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 5727 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||||||||||| || ||||| || | || | | || || || ||||| ||| Sbjct 5726 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 5667 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| |||||||||| | || || ||||| | ||||| || Sbjct 5666 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 5607 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || || || Sbjct 5606 CTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||||||| ||| ||||||||| | ||| | || || | |||| ||||||||||| || Sbjct 348683 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 348741 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||||||||||| || ||||| || | || | | || || || ||||| ||| Sbjct 348742 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 348801 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| |||||||||| | || || ||||| | ||||| || Sbjct 348802 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 348861 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || || || Sbjct 348862 CTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||||||| ||| ||||||||| | ||| | || || | |||| ||||||||||| || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 347118 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||||||||||| || ||||| || | || | | || || || ||||| ||| Sbjct 347119 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 347178 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| |||||||||| | || || ||||| | ||||| || Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || || || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||||||| ||| ||||||||| | ||| | || || | |||| ||||||||||| || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 347118 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||||||||||| || ||||| || | || | | || || || ||||| ||| Sbjct 347119 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 347178 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| |||||||||| | || || ||||| | ||||| || Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || || || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 44141 GTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||||||| ||| ||||||||| | ||| | || || | |||| ||||||||||| || Sbjct 1868225 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGAC-CGTCTTCCAGCTGCTTACC 1868283 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||||||||||| || ||||| || | || | | || || || ||||| ||| Sbjct 1868284 AGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTT 1868343 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| |||||||||| | || || ||||| | ||||| || Sbjct 1868344 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 1868403 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || || || Sbjct 1868404 CTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989535685549