Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq131 161 2e-34 seq128 147 5e-30 seq15 131 4e-25 seq92 127 5e-24 seq77 127 5e-24 seq67 127 5e-24 seq62 127 5e-24 seq3 127 5e-24 >seq131 Length=1298602 Score = 161 bits (178), Expect = 2e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| ||||| || ||||||||||||||||| || || ||||||| Sbjct 571127 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 571068 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || |||||||| |||||||| ||||| | Sbjct 571067 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGA 571008 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || ||||| | || || |||| || ||| |||| || | Sbjct 571007 TCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 570948 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || ||||| Sbjct 570947 AATCCACTCTCCACCTTGT 570929 Score = 150 bits (166), Expect = 4e-31 Identities = 161/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || |||||||||||||||||| || ||| Sbjct 570678 CAGATTTTCGTCAAGACTCTGACTGGCAAGACAATCACCCTCGAGGTGGAATCTTCCGAC 570619 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 570618 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAG 570559 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||||| ||||| || | || |||| ||| || ||| | Sbjct 570558 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCAC-CTTGAGCGACTACAACAT 570500 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || || |||||||| |||| || Sbjct 570499 CCAGAAGGAGAGCACACTGCA-CTTGGTT 570472 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || || || Sbjct 571420 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGAT 571361 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| |||||||| Sbjct 571360 ACCATCGACAATGTGAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 571301 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || || ||||| ||||| | ||||| |||| || ||| || Sbjct 571300 CGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 571241 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 571240 CAGAAGGAGTCCACCCTCCACCTGGT 571215 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| | ||||| ||| |||||| Sbjct 570906 CAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCAGAC 570847 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||||||||| || || || || ||||| ||||| Sbjct 570846 ACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAG 570787 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||||| || || || | || |||| ||| || ||| | Sbjct 570786 CGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCAC-CTTGAGCGACTACAACAT 570728 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || ||||| Sbjct 570727 TCAGAAGGAGAGCACACTTCACCTTGT 570701 >seq128 Length=1745744 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 1611540 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1611481 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || ||||||||||| Sbjct 1611480 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 1611421 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || ||||| | || || |||| || ||| || Sbjct 1611420 CGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAACATC 1611361 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1611360 CAGAAGGAGTCTACCCTCCACCTGGT 1611335 >seq15 Length=381730 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||| ||||| || ||| ||||| || Sbjct 261812 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 261753 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || ||||||||||| ||| | Sbjct 261752 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 261693 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || |||||||| ||||| | || ||| |||| || ||| |||| || Sbjct 261692 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAA 261633 >seq92 Length=352844 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| | || || ||||||||| |||||||| || ||| Sbjct 5592 CAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 5651 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| | || || || ||||||||| Sbjct 5652 ACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCAGCAA 5711 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| ||||| || Sbjct 5712 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 5746 >seq77 Length=352580 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| | || || ||||||||| |||||||| || ||| Sbjct 348876 CAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 348817 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| | || || || ||||||||| Sbjct 348816 ACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCAGCAA 348757 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| ||||| || Sbjct 348756 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 348722 >seq67 Length=351041 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| | || || ||||||||| |||||||| || ||| Sbjct 347253 CAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 347194 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| | || || || ||||||||| Sbjct 347193 ACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCAGCAA 347134 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| ||||| || Sbjct 347133 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 347099 >seq62 Length=351717 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| | || || ||||||||| |||||||| || ||| Sbjct 347253 CAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 347194 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| | || || || ||||||||| Sbjct 347193 ACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCAGCAA 347134 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| ||||| || Sbjct 347133 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 347099 >seq3 Length=1872122 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| | || || ||||||||| |||||||| || ||| Sbjct 1868418 CAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCCGAC 1868359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| | || || || ||||||||| Sbjct 1868358 ACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCAGCAA 1868299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| ||||| || Sbjct 1868298 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 1868264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728161707218