Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq128 152 5e-32 seq131 140 3e-28 seq15 129 5e-25 seq92 93.3 4e-14 seq77 93.3 4e-14 seq67 93.3 4e-14 seq62 93.3 4e-14 seq3 93.3 4e-14 >seq128 Length=1745744 Score = 152 bits (168), Expect = 5e-32 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| ||||||||| Sbjct 1611317 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1611376 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| |||| ||||| ||||||| |||| Sbjct 1611377 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1611436 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 1611437 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 1611494 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 1611495 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1611546 >seq131 Length=1298602 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||||| |||||||||||||| ||||| |||||| Sbjct 570454 GCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 570513 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || |||||||| || || || |||| |||||| ||||| | || Sbjct 570514 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 570573 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| | || | | ||| | | | |||||| || |||| Sbjct 570574 AATGCCTTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCA 570632 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 570633 CCTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 136 bits (150), Expect = 4e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || |||||||||||||||||||| |||||| Sbjct 570683 CCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 570742 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || ||||||||||| || || || || ||||| || |||| |||| Sbjct 570743 AAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGA 570802 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | |||| ||| || | || | ||||| || || Sbjct 570803 ATACCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCG--ATGGTGTCTGATGATTCA 570859 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| |||||| ||||| |||||||| Sbjct 570860 ACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||| ||||| ||||||||| Sbjct 570911 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 570970 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| ||||| ||||| ||||| | || Sbjct 570971 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 571030 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | || || |||||||| Sbjct 571031 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCAGATGACTCCAC 571089 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 571090 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGA 571127 >seq15 Length=381730 Score = 129 bits (142), Expect = 5e-25 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| |||||||| | || |||||||||||||| || || | Sbjct 261631 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 261690 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 261691 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 261750 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 261751 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 261808 Query 41851 GAAA 41854 |||| Sbjct 261809 GAAA 261812 >seq92 Length=352844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 ||||||| |||||| ||||| ||||| | |||| | |||| || |||||||| || Sbjct 5785 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 5726 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||| ||| || ||||| | ||||| |||||| ||||| ||| | || | | Sbjct 5725 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCG-TGAATCTTGGACTT 5667 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| || ||||||| | || || || || | || || || Sbjct 5666 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 5607 Query 41845 CTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || Sbjct 5606 CTTGACGAAAATCTGTAT 5589 >seq77 Length=352580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 ||||||| |||||| ||||| ||||| | |||| | |||| || |||||||| || Sbjct 348683 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 348742 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||| ||| || ||||| | ||||| |||||| ||||| ||| | || | | Sbjct 348743 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCG-TGAATCTTGGACTT 348801 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| || ||||||| | || || || || | || || || Sbjct 348802 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 348861 Query 41845 CTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || Sbjct 348862 CTTGACGAAAATCTGTAT 348879 >seq67 Length=351041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 ||||||| |||||| ||||| ||||| | |||| | |||| || |||||||| || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 347119 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||| ||| || ||||| | ||||| |||||| ||||| ||| | || | | Sbjct 347120 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCG-TGAATCTTGGACTT 347178 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| || ||||||| | || || || || | || || || Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 41845 CTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq62 Length=351717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 ||||||| |||||| ||||| ||||| | |||| | |||| || |||||||| || Sbjct 347060 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 347119 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||| ||| || ||||| | ||||| |||||| ||||| ||| | || | | Sbjct 347120 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCG-TGAATCTTGGACTT 347178 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| || ||||||| | || || || || | || || || Sbjct 347179 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 347238 Query 41845 CTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || Sbjct 347239 CTTGACGAAAATCTGTAT 347256 >seq3 Length=1872122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 41666 GTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCG 41725 ||||||| |||||| ||||| ||||| | |||| | |||| || |||||||| || Sbjct 1868225 GTGCTCTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCA 1868284 Query 41726 GCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTC 41785 || || |||| ||| || ||||| | ||||| |||||| ||||| ||| | || | | Sbjct 1868285 GCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCG-TGAATCTTGGACTT 1868343 Query 41786 AACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 ||| | | | |||||| || ||||||| | || || || || | || || || Sbjct 1868344 GACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGT 1868403 Query 41845 CTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || Sbjct 1868404 CTTGACGAAAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302861576400