Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2158 163 3e-35 seq1409 138 1e-27 seq2769 95.1 1e-14 >seq2158 Length=8959 Score = 163 bits (180), Expect = 3e-35 Identities = 315/456 (69%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | || |||||| | | | || |||||| | |||||| Sbjct 2327 AGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCCACCTTCGCCCAGCGCC 2268 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || || |||||||| | ||||| ||| |||||| |||| || | Sbjct 2267 TTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 2208 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || ||||||||||| || || ||| |||||| || |||||| | | Sbjct 2207 GGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGTG 2148 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220 |||| || || || || |||||||| | |||||| || | | || || | Sbjct 2147 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGCCCTG 2088 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | || |||| || ||| |||| || || ||| ||||||||||| ||||| Sbjct 2087 ACCCCAGTGC-CGTCGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCCTG 2029 Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 || || || || || |||| || || || | || ||| || | |||| || |||| Sbjct 2028 ACTGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGTCAGTACA 1971 Query 117339 TCGAGTTCGTCGCCGACAGGCT----GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 | |||||||||||||| ||||| | ||||| | | | | ||| ||||||| Sbjct 1970 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAATAAG----AAGTTCTACAAC 1915 Query 117395 ACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 || ||||||| | ||||||||| || |||||| Sbjct 1914 ACAACCAACCCCTTCGACTTTATGGACAATATCTCC 1879 Score = 145 bits (160), Expect = 8e-30 Identities = 203/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | ||| ||| | || || Sbjct 2733 ATCTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATCTC 2674 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | | | || ||| | || || |||||| Sbjct 2673 TCCAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 2614 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || |||| || ||||||||| ||| |||||||| |||||||| || | |||||| Sbjct 2613 CATGTCTTGGCTTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTGAGCGT 2554 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||||| | || || ||||||||||| ||||| |||||| ||| Sbjct 2553 TTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATGATG 2494 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || ||| | ||||| |||| || || |||||||||||| || Sbjct 2493 GAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATA 2450 >seq1409 Length=7126 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||||||||||||||| | || || ||| ||| | Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| || || ||||| | ||||| Sbjct 528 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACCA 586 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || |||||||| || |||| || || || || ||||| Sbjct 587 GCAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAA 646 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | || |||| ||| | ||||| Sbjct 647 CATCCAGAAGGAGAGCACGTTGCATTTGGTCCTGCGGTTGCGAGGCGG 694 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| | | Sbjct 250 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 309 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || || | |||||||| |||||||| | ||||||||||| ||| Sbjct 310 ACAACG-TGAAGACCAAGATCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTC 368 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || |||||||| || |||| | || || |||||||||||| || ||| Sbjct 369 ATCTTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAG 428 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || | || || || || || |||| || | || ||| Sbjct 429 GAATCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGC 467 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || |||| ||| || ||||| || || Sbjct 38 GACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCAGGAAAACAACTCGAG 97 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || || |||||| ||||||||||||||| |||| || || || || Sbjct 98 GACGGCCGGACGCTGTCCGACTATAACATCCAGAAGGAGTCCACCCTTCACCTCGT 153 >seq2769 Length=18169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| | |||||||| || || |||| ||| || |||||||| || Sbjct 11101 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTCGAG 11160 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| ||| || || ||||||||||| ||||||||| |||| || || || ||| Sbjct 11161 GACGGGCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTG 11217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198043811600