Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2158 163 3e-35
seq1409 138 1e-27
seq2769 95.1 1e-14
>seq2158
Length=8959
Score = 163 bits (180), Expect = 3e-35
Identities = 315/456 (69%), Gaps = 14/456 (3%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| | || |||||| | | | || |||||| | ||||||
Sbjct 2327 AGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCCACCTTCGCCCAGCGCC 2268
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || ||||| || || |||||||| | ||||| ||| |||||| |||| || |
Sbjct 2267 TTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 2208
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || || ||||||||||| || || ||| |||||| || |||||| | |
Sbjct 2207 GGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGTG 2148
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220
|||| || || || || |||||||| | |||||| || | | || || |
Sbjct 2147 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGCCCTG 2088
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
| | | | || |||| || ||| |||| || || ||| ||||||||||| |||||
Sbjct 2087 ACCCCAGTGC-CGTCGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCCTG 2029
Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338
|| || || || || |||| || || || | || ||| || | |||| || ||||
Sbjct 2028 ACTGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGTCAGTACA 1971
Query 117339 TCGAGTTCGTCGCCGACAGGCT----GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394
| |||||||||||||| ||||| | ||||| | | | | ||| |||||||
Sbjct 1970 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAATAAG----AAGTTCTACAAC 1915
Query 117395 ACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
|| ||||||| | ||||||||| || ||||||
Sbjct 1914 ACAACCAACCCCTTCGACTTTATGGACAATATCTCC 1879
Score = 145 bits (160), Expect = 8e-30
Identities = 203/284 (71%), Gaps = 3/284 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||| | ||| ||| | || ||
Sbjct 2733 ATCTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATCTC 2674
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | | | || ||| | || || ||||||
Sbjct 2673 TCCAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 2614
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|| || |||| || ||||||||| ||| |||||||| |||||||| || | ||||||
Sbjct 2613 CATGTCTTGGCTTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTGAGCGT 2554
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || ||||| | || || ||||||||||| ||||| |||||| |||
Sbjct 2553 TTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATGATG 2494
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
|| ||| | ||||| |||| || || |||||||||||| ||
Sbjct 2493 GAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATA 2450
>seq1409
Length=7126
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||||||||||||||| | || || ||| ||| |
Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| ||| || | ||||| || || ||||| | |||||
Sbjct 528 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACCA 586
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| || || |||||||| || |||| || || || || |||||
Sbjct 587 GCAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAA 646
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| ||||| | || |||| ||| | |||||
Sbjct 647 CATCCAGAAGGAGAGCACGTTGCATTTGGTCCTGCGGTTGCGAGGCGG 694
Score = 122 bits (134), Expect = 9e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| | |
Sbjct 250 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 309
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| | ||| || || | |||||||| |||||||| | ||||||||||| |||
Sbjct 310 ACAACG-TGAAGACCAAGATCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTC 368
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || |||||||| || |||| | || || |||||||||||| || |||
Sbjct 369 ATCTTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAG 428
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|| | || || || || || |||| || | || |||
Sbjct 429 GAATCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGC 467
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || || |||| ||| || ||||| || ||
Sbjct 38 GACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCAGGAAAACAACTCGAG 97
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| || || || |||||| ||||||||||||||| |||| || || || ||
Sbjct 98 GACGGCCGGACGCTGTCCGACTATAACATCCAGAAGGAGTCCACCCTTCACCTCGT 153
>seq2769
Length=18169
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || ||| | |||||||| || || |||| ||| || |||||||| ||
Sbjct 11101 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTCGAG 11160
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||| ||| || || ||||||||||| ||||||||| |||| || || || |||
Sbjct 11161 GACGGGCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTG 11217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515198043811600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |