Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1409 120 3e-22 seq2769 96.9 3e-15 >seq1409 Length=7126 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || || | ||||| || || || |||||||||||||| ||| | Sbjct 466 CCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAC 407 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||||||||||||||||||||| |||||||||| ||||| || || || Sbjct 406 AGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGG 347 Query 118632 ATGCCCTCCTTGTC-TGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 ||||| || ||||| || | | || || || || | |||| |||||| || |||| Sbjct 346 ATGCCTTCTTTGTCCTGGA--TCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGA 289 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| | || | || ||||||||||||||||| || Sbjct 288 CCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Score = 104 bits (114), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | || ||||| || | || ||| || || ||||||||||| Sbjct 696 TACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAG 637 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||||||||||| || |||||||||||||||| || || | Sbjct 636 ACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTG 577 Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | || || ||||||| ||| | | ||||| || || | || | ||||| || || Sbjct 576 GGATACCTTCCTTGTCCTGGA--TCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTC 519 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| | || | |||||||| || || || || || || ||||||||| || Sbjct 518 TACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATGCCT 464 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || ||| || || || |||||||| |||||||| Sbjct 141 GTGGACTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCCTCGAGTTGTTTTCCT 82 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||| |||| || |||||||| || || || ||||||||||||||| Sbjct 81 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 37 >seq2769 Length=18169 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || ||||||||||| || | ||| ||| ||||| Sbjct 11217 CACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCCTC 11158 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 |||||||||||| ||| |||| ||||||||||| || || || || |||||||||||| Sbjct 11157 GAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 11100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813031193220