Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1055 228 7e-55 seq2158 149 6e-31 seq1409 111 1e-19 >seq1055 Length=3912 Score = 228 bits (252), Expect = 7e-55 Identities = 495/733 (68%), Gaps = 12/733 (2%) Strand=Plus/Minus Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGC 23308 |||||| ||||| || ||||| || | ||||| ||| || |||| ||| || | | Sbjct 2193 ACTTTTCATACAAAGCCTCAAACTCTTCTCCGTAGACA-TCAGCCAAGCCAGGAGCCTCA 2135 Query 23309 ATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 | || || | || |||| || | | || |||||||| || |||| || | ||| | Sbjct 2134 TTGGGGCAGAATAGGGTCCA-ATCGCCATTC-TTTTCAACTCGCTTCATGAACAAATCAG 2077 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | |||| || || |||| || || ||||| || || || || || || |||||| Sbjct 2076 GAGTCCACAGGGCCAAGAAGAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGC 2017 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 | || | || || || || || |||||||| ||||| ||||| | ||||| || | Sbjct 2016 GGAGGTCAAGGAACTCAAAGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCAC 1957 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 | || | ||| ||||||||||| ||||| || | ||| ||||||||| |||| | |||| Sbjct 1956 CAGGACGCTTGTTGCCGCCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCA 1897 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 | || || | |||||||| | |||| || || | || || | || || | Sbjct 1896 TGGGTACAATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGA 1837 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 ||| |||| | || || |||||| | | || || |||| || || |||| Sbjct 1836 TACGGTGGACGTTAAGGCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCA 1777 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 | ||||||||||| || ||||| |||||||| || | | | | ||| || |||| || Sbjct 1776 GTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCA 1717 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 |||||| | || || |||| ||| || || || ||| || || |||||| | Sbjct 1716 TTTGCGGCTGCGGGGTTCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCT 1657 Query 23787 TCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGG 23846 ||||| |||||||| || || || | |||| |||||| ||||| ||||||| | Sbjct 1656 GGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCG 1597 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACA 23903 | || ||||| ||||| | || || | ||| ||| || ||||| || | || Sbjct 1596 CAACTCGCATTATCATATGCTGTGGCCGTTCGGCAACCTTG---CCGTTGGTTCGTAGCA 1540 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCA 23963 | ||||| | || | ||| || || || || || | |||||||||||||| |||| || Sbjct 1539 GGTATGACCTTTCAAGCGTCTTGAAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACA 1480 Query 23964 CTATGGCCGAATT 23976 | || ||||| || Sbjct 1479 CGATAGCCGAGTT 1467 Score = 152 bits (168), Expect = 5e-32 Identities = 433/656 (66%), Gaps = 17/656 (3%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 ||||||| ||||| |||||||| ||||| ||||| | |||||| || || || || Sbjct 3364 TGGTGCGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATAC 3305 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || | ||||| ||||| | || || | |||| ||| ||| ||| |||| Sbjct 3304 TGGTGATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGA 3245 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACG 22321 | || || |||||||| |||||||| | | |||| ||||| || |||||||| ||| Sbjct 3244 TGAAGGCGCCTCGATCAGCGGCCATCTGAA-CAATAGTACGTTGAGAAATTTCCCACACG 3186 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCC---G 22378 ||||||||||| | |||| ||| || || ||| | |||| ||| || | Sbjct 3185 GTCTTGTACAGAGCCTTGATATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCG 3126 Query 22379 TTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCT 22438 | | | ||||| || || || | ||| ||||| |||| | || | ||| Sbjct 3125 TCAGCG---ATGATACGGTTCTTCATATTGTCGGACCACAGGCCGAGGTCGACTAGGTCT 3069 Query 22439 TTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAAT 22497 |||| || |||| || ||||| |||||||| | |||| || |||||| ||| || Sbjct 3068 TTGAGAAGCCACGGGTTGACGACTTGGAACTCGCCAG-CAAGTACACGGCGTGAGTAGAT 3010 Query 22498 GTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGT 22557 |||||| ||| | ||||| || | || ||| || || |||||| ||| || || Sbjct 3009 GTTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGT 2950 Query 22558 CGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG 22617 ||||| ||||| | |||| ||| | | |||||||| || || | | || || Sbjct 2949 TGGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAG 2890 Query 22618 --CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 |||| ||||||||| || |||| ||||| || || ||||||||||||||| | Sbjct 2889 ACCATC--CCAGTCCCAGAGGTCGGTTGGCGTTACGTT---CCACATATCGTATTGAAGG 2835 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGT 22735 | || || | ||| || || || | ||| ||||||| | | |||||| Sbjct 2834 ATACCCTGAGAAACAGGGGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGC 2775 Query 22736 TCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 || || || |||||| | | || | ||||||||||||| ||||||| Sbjct 2774 TCACACGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAA 2719 >seq2158 Length=8959 Score = 149 bits (164), Expect = 6e-31 Identities = 361/542 (67%), Gaps = 10/542 (2%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | ||| |||||| || | |||| |||||| || | Sbjct 2329 CAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCCACCTTCGCCCAGCG 2270 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || || || || ||||| ||||| ||||| ||| ||| || | || || Sbjct 2269 CCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTT 2210 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || |||||||| || || || |||||| | || || || Sbjct 2209 CTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCG 2150 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 ||||| || || || ||||||||||| ||||| ||| ||||||| | | || || Sbjct 2149 TGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGCCC 2090 Query 58154 -GACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 ||| | | | | || || ||| ||||| || || ||| | ||||| | ||||| Sbjct 2089 TGACCCCAG-TGCCGTCGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCC 2031 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | || || ||||| || ||| | ||||| ||||| | | | |||| |||||| Sbjct 2030 TGACTGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGCTCATGTGTCAGTACA 1971 Query 58273 TTGAGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||||||| || ||||| || ||| |||||| | || ||| || |||||| Sbjct 1970 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAAT--AAGAAGTTC--TACAAC 1915 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 || | || || || || |||||| | ||||| || | |||||||| ||||| ||| Sbjct 1914 ACAACCAACCCCTTCGACTTTATGGACAATATCTCCCTTGCTGGCAAGACCAACTTCTTC 1855 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGAC 58448 || || ||| | || || || ||| || || ||| | ||| |||| ||| || Sbjct 1854 GAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTGTCATGGCCAGTACCAAGAAGGAAGAG 1795 Query 58449 GA 58450 || Sbjct 1794 GA 1793 Score = 102 bits (112), Expect = 7e-17 Identities = 202/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||| | |||||| | || || Sbjct 2733 ATCTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATCTC 2674 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||| | ||| ||| | | ||||| || ||| || || || Sbjct 2673 TCCAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 2614 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||||| || |||||||| |||||||| || ||||||||||| | | | || Sbjct 2613 CATGTCTTGGCTTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTG--AGC 2556 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||| ||||| || || |||| || | ||||| || || || || | | Sbjct 2555 GTTTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATGA 2496 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | |||||| | || || |||| || || || |||||||| || || | ||||| Sbjct 2495 TGGAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATATATTAAGGA 2441 >seq1409 Length=7126 Score = 111 bits (122), Expect = 1e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || |||||||| ||||| || ||||| | || || ||| | ||||| ||| Sbjct 250 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 309 Query 31263 AAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || || || ||| | |||||| |||||| | ||||| |||||||| ||||| Sbjct 310 ACAACGTGAAGACCAAGA-TCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTC 368 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| |||||| | || ||| | ||| || ||| || ||||||||||| Sbjct 369 ATCTTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAG 428 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || || || || Sbjct 429 GAATCAACTCTCCACCTTGTCCT 451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || |||||||| ||||| | || || ||| | Sbjct 467 CATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAG 526 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| ||| ||| | |||||||||||| | || || |||| Sbjct 527 CGACACGATAGACAACGTCAAGACAAAGA-TCCAGGACAAGGAAGGTATCCCACCAGACC 585 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || || |||||| | || ||| ||| || ||||| | Sbjct 586 AGCAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACA 645 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || | ||| |||| || | || | ||||||| Sbjct 646 ACATCCAGAAGGAGAGCACGTTGCATTTGGTCCTGCGGTTGCGAGGCGGTA 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748095717200