Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2158 98.7 2e-15 seq1055 86.0 1e-11 >seq2158 Length=8959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 2267 TTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 2208 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | |||| || ||||||| |||||| || | || || | | Sbjct 2207 GGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGTG 2148 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||||||| || || || ||||| ||| | ||||| Sbjct 2147 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTT 2111 >seq1055 Length=3912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||||| ||||| |||||||| ||||| | || ||| || || || || ||||| Sbjct 1820 GCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACC 1761 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903 || || || || || | | | | | |||||||| || | | ||| || || | | Sbjct 1760 TTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGG-G 1702 Query 94904 TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCAT 94963 |||| ||| || || ||||| || |||||||| || || | | |||||||||| | Sbjct 1701 TTCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGT 1642 Query 94964 ATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 |||||||||| || | | ||| ||||| || ||||| || || ||||| |||| Sbjct 1641 ATGTTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCA 1582 Query 95024 TGTCCTGAGGGCGCTC 95039 | | ||| || || || Sbjct 1581 TATGCTGTGGCCGTTC 1566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989542349337175