Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1055 224 1e-53
seq2158 87.8 2e-12
>seq1055
Length=3912
Score = 224 bits (248), Expect = 1e-53
Identities = 590/896 (66%), Gaps = 6/896 (1%)
Strand=Plus/Minus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
|| ||||| ||||| | ||| | || |||||| ||||| || || | | | |
Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117
Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061
|| || |||| || ||| ||||| ||||| || | ||||||| |||| || || | |
Sbjct 2116 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGA 2059
Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121
| ||||| | || | || || ||||| ||||| || || |||||| | |
Sbjct 2058 AGAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 1999
Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181
| ||||| |||||| || |||| ||| || || | | || || || ||||| || |
Sbjct 1998 AGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGC 1939
Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241
|||| || | ||||| |||||||| || | || | | ||| || | ||| || ||||
Sbjct 1938 CCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGG 1879
Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301
| | || ||||| || | || ||| ||| ||||||| ||| | | || |
Sbjct 1878 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGC 1819
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| || || || || | || ||||| || || || || | || || ||||| || |
Sbjct 1818 CGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 1759
Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421
| ||||| || ||| |||||| || || || ||| || |||||| | | ||||
Sbjct 1758 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 1699
Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481
| ||||| || | ||| ||||| || || || || |||| | |||| |||||||| |
Sbjct 1698 CGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 1639
Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541
| ||||| || || | ||| || || || ||||| || ||||||| |||||
Sbjct 1638 TTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATAT 1579
Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601
|||| || | ||| | | |||| || || | || ||| || |||| | || |
Sbjct 1578 GCTGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCT 1519
Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661
| || || || || | ||| |||||| || ||||| | ||| |||| ||||||| |
Sbjct 1518 TGAAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTT 1459
Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCAT 72721
| || ||| | || || ||| ||| | || || || |||| | | || |
Sbjct 1458 CAGCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGT 1399
Query 72722 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTT 72780
| || || || ||||||| | | || || || || || | ||| | || || |||
Sbjct 1398 TCTTTGGGTTGACATAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGTT 1340
Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
| |||||| || || || || |||||||| || || ||||||||||| ||||||||
Sbjct 1339 TGCTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284
Score = 96.9 bits (106), Expect = 5e-15
Identities = 198/291 (68%), Gaps = 5/291 (2%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | ||| || || ||||||| || || || | || || ||||||||||||
Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCT 70907
|| || || |||||||| |||| ||| || |||||||| || | ||| || | |
Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 3286
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
|| || | ||| || || | ||| ||| || ||||||||||| || | || ||
Sbjct 3285 CGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGC 3226
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
||||| | | || || ||| | ||||||||| | || || || | ||| ||
Sbjct 3225 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 3166
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075
|||| |||| | ||| | | || || ||||| ||||| || || || ||
Sbjct 3165 ATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGAT 3115
>seq2158
Length=8959
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165
||||||||| || |||||||||||||| || |||||||| || ||||| || || || ||
Sbjct 2161 TTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGC 2220
Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213
|| || || ||||| || || || || || |||||||||| |||
Sbjct 2221 GAAGGAGCCGCTGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAG 2268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671111641346600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |