Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1055 224 1e-53 seq2158 87.8 2e-12 >seq1055 Length=3912 Score = 224 bits (248), Expect = 1e-53 Identities = 590/896 (66%), Gaps = 6/896 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| ||||| | ||| | || |||||| ||||| || || | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 || || |||| || ||| ||||| ||||| || | ||||||| |||| || || | | Sbjct 2116 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGA 2059 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | ||||| | || | || || ||||| ||||| || || |||||| | | Sbjct 2058 AGAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 1999 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||||| |||||| || |||| ||| || || | | || || || ||||| || | Sbjct 1998 AGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGC 1939 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||||| |||||||| || | || | | ||| || | ||| || |||| Sbjct 1938 CCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGG 1879 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | | || ||||| || | || ||| ||| ||||||| ||| | | || | Sbjct 1878 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGC 1819 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || | || ||||| || || || || | || || ||||| || | Sbjct 1818 CGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 1759 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | ||||| || ||| |||||| || || || ||| || |||||| | | |||| Sbjct 1758 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 1699 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||||| || | ||| ||||| || || || || |||| | |||| |||||||| | Sbjct 1698 CGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 1639 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 | ||||| || || | ||| || || || ||||| || ||||||| ||||| Sbjct 1638 TTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATAT 1579 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 |||| || | ||| | | |||| || || | || ||| || |||| | || | Sbjct 1578 GCTGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCT 1519 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661 | || || || || | ||| |||||| || ||||| | ||| |||| ||||||| | Sbjct 1518 TGAAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTT 1459 Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCAT 72721 | || ||| | || || ||| ||| | || || || |||| | | || | Sbjct 1458 CAGCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGT 1399 Query 72722 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTT 72780 | || || || ||||||| | | || || || || || | ||| | || || ||| Sbjct 1398 TCTTTGGGTTGACATAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGTT 1340 Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | |||||| || || || || |||||||| || || ||||||||||| |||||||| Sbjct 1339 TGCTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 96.9 bits (106), Expect = 5e-15 Identities = 198/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||| || || ||||||| || || || | || || |||||||||||| Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCT 70907 || || || |||||||| |||| ||| || |||||||| || | ||| || | | Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 3286 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || | ||| || || | ||| ||| || ||||||||||| || | || || Sbjct 3285 CGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGC 3226 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 3225 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 3166 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 |||| |||| | ||| | | || || ||||| ||||| || || || || Sbjct 3165 ATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGAT 3115 >seq2158 Length=8959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||||||||| || |||||||||||||| || |||||||| || ||||| || || || || Sbjct 2161 TTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGC 2220 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 || || || ||||| || || || || || |||||||||| ||| Sbjct 2221 GAAGGAGCCGCTGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAG 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671111641346600