Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2158 120 5e-22 seq1055 91.5 2e-13 >seq2158 Length=8959 Score = 120 bits (132), Expect = 5e-22 Identities = 339/513 (66%), Gaps = 27/513 (5%) Strand=Plus/Minus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | ||| || || ||||| | |||| || || |||||| | || | || || Sbjct 2343 GTTCCATGTATCCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCC 2284 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | |||| | | || || || || || || || ||||| || ||||| || Sbjct 2283 ACCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCC 2224 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || || ||||||| ||||| |||||||| || |||||||||||||| || | ||| Sbjct 2223 TTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAAC 2164 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590 || |||| || || ||||| ||||||||| ||| |||||| || ||||| || || Sbjct 2163 GAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCAC 2104 Query 125591 CT-ATCT-GCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 || | || || || || ||| || || ||| ||||| | || || Sbjct 2103 CTCAACTATCGCCCTGACCCCAGTGCCGTCG------AGGCCATCA------TCACTGAA 2056 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || || | || || || ||||| || || || |||| || | | | |||||| Sbjct 2055 GCAGTCACCATCGAGCAGGAGTTCCTGACTGATGCCCTCCCCTGTGCCCTTCTCGGCATG 1996 Query 125709 AACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 || ||| ||||| ||||| ||||||| ||||| || || ||| | || || ||| Sbjct 1995 AA-TGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGGCTTCT-----CGTT 1942 Query 125768 G--ATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | |||| |||| | |||||| | | || ||||| || || ||| || || Sbjct 1941 GCTCTTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGACTTTATGGACAATATC 1882 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || | || ||||||||||| ||||||||| Sbjct 1881 TCCCTTGCTGGCAAGACCAACTTCTTCGAGAAG 1849 >seq1055 Length=3912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || || || | || ||||| |||| || ||||| || || Sbjct 1935 CAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATGGCATGCTGAT 1994 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| ||| ||| ||||| | || ||| | || Sbjct 1995 GTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGAT 2054 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || | || || ||| || ||||||||||||||||| || | | |||| | Sbjct 2055 CTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGAT 2114 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| |||| | |||||| | | | || || || | ||| || || ||||||||| Sbjct 2115 TGGACCCTATTCTGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTACGGAGAAGAGTTT 2174 Query 97116 GAGGC 97120 ||||| Sbjct 2175 GAGGC 2179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741028770256600