Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2158 120 5e-22
seq1055 91.5 2e-13
>seq2158
Length=8959
Score = 120 bits (132), Expect = 5e-22
Identities = 339/513 (66%), Gaps = 27/513 (5%)
Strand=Plus/Minus
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411
|| || | ||| || || ||||| | |||| || || |||||| | || | || ||
Sbjct 2343 GTTCCATGTATCCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCC 2284
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471
| | |||| | | || || || || || || || ||||| || ||||| ||
Sbjct 2283 ACCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCC 2224
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
|| || ||||||| ||||| |||||||| || |||||||||||||| || | |||
Sbjct 2223 TTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAAC 2164
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590
|| |||| || || ||||| ||||||||| ||| |||||| || ||||| || ||
Sbjct 2163 GAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCAC 2104
Query 125591 CT-ATCT-GCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648
|| | || || || || ||| || || ||| ||||| | || ||
Sbjct 2103 CTCAACTATCGCCCTGACCCCAGTGCCGTCG------AGGCCATCA------TCACTGAA 2056
Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708
|| || | || || || ||||| || || || |||| || | | | ||||||
Sbjct 2055 GCAGTCACCATCGAGCAGGAGTTCCTGACTGATGCCCTCCCCTGTGCCCTTCTCGGCATG 1996
Query 125709 AACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767
|| ||| ||||| ||||| ||||||| ||||| || || ||| | || || |||
Sbjct 1995 AA-TGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGGCTTCT-----CGTT 1942
Query 125768 G--ATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822
| |||| |||| | |||||| | | || ||||| || || ||| || ||
Sbjct 1941 GCTCTTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGACTTTATGGACAATATC 1882
Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|| || | || ||||||||||| |||||||||
Sbjct 1881 TCCCTTGCTGGCAAGACCAACTTCTTCGAGAAG 1849
>seq1055
Length=3912
Score = 91.5 bits (100), Expect = 2e-13
Identities = 167/245 (68%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||||||||| || || || || || | || ||||| |||| || ||||| || ||
Sbjct 1935 CAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATGGCATGCTGAT 1994
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || | ||||| ||| ||| ||||| | || ||| | ||
Sbjct 1995 GTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGAT 2054
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || | || || ||| || ||||||||||||||||| || | | |||| |
Sbjct 2055 CTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGAT 2114
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| |||| | |||||| | | | || || || | ||| || || |||||||||
Sbjct 2115 TGGACCCTATTCTGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTACGGAGAAGAGTTT 2174
Query 97116 GAGGC 97120
|||||
Sbjct 2175 GAGGC 2179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741028770256600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |