Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1409 105 4e-18 >seq1409 Length=7126 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||||| ||||||| ||||||||||| || ||| || || || ||||||||||| Sbjct 695 ACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGA 636 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | ||| || | || ||||| ||| || | ||| |||||||| | || Sbjct 635 CAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGG 576 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 || ||||| || || ||| ||| || || | | ||||||||| ||| || | Sbjct 575 GATACCTTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTA 517 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | ||||| || || ||||| |||||||| || || ||||| || |||||| Sbjct 516 CCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATG 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318764837439930