Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq1828 82.4 7e-11 >seq1828 Length=57706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/231 (70%), Gaps = 14/231 (6%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 || || ||||| | || |||||||| ||||| || | | ||||||| || ||| Sbjct 706 CGGACTGTGAGACATGTATTGAGCAGGAGCACCCCTTGCTGGGCCCAGGGAGTGAG-CAG 648 Query 99604 CCGTGCTGCGGCCG-CGGGGTCC-------CGGGGAAGTTCTTCTGCACGGCCGCGTAGA 99655 || | | |||| | |||| ||| | ||| ||| |||| || |||| ||||| Sbjct 647 CCCTCC-GCGGTTGGCGGGCTCCTCGAAGGCCGGGTAGTCATTCTTCAGGGCCAGGTAGA 589 Query 99656 TGTTCTGGAG-GCTGGGCGGGATCG-GAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTG 99713 |||||| ||| | ||| | | | | | | || | || ||| |||| |||||||| Sbjct 588 TGTTCTTGAGCGAAGGGGGAGCTGGCGTAGGCGGGCGT--ACGGAGAAGCAGAGGCCGTG 531 Query 99714 GGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| |||||| ||||||| ||||||||||| | |||||| ||||||| Sbjct 530 AGCCTGGCCGTGGTTGTGGTACGGGTCCTGGCCTATGATGACCGCCTTGAC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440881095576600