Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1409 123 2e-23 >seq1409 Length=7126 Score = 123 bits (136), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| |||| ||||| ||||| || ||||| || | ||| ||||| | Sbjct 694 CCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGAC 635 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| ||||||||||| ||||||| | | ||||| ||||| || Sbjct 634 AGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 575 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 |||||||| ||||| | || |||| ||||||| | | | ||||| || ||| || | Sbjct 574 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTC-GC-TGGATTCTA 517 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||||||| || ||||| || || || ||||||||||||| Sbjct 516 CCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATGC 466 Score = 116 bits (128), Expect = 3e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| || | ||| | ||| ||||||||||| | ||| || ||| | Sbjct 466 CCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAC 407 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || ||||| ||||||||||| | ||||| | | |||||| ||||| || Sbjct 406 AGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGG 347 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 || ||||||||||| | || || | ||| ||| | ||| ||||| || ||| |||| Sbjct 346 ATGCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTC-GC-TGGATTCGA 289 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | |||| |||||||| || || || ||||||||||| Sbjct 288 CCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448272792042600