Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1357 129 9e-26 seq2433 102 1e-17 >seq1357 Length=63110 Score = 129 bits (142), Expect = 9e-26 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 56287 GCCAAACGCCATCGCAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCTGCCAT 56345 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| ||||||||| |||| | || |||| | |||| Sbjct 56346 CCGCCGTCTCGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGGCGAGAC 56405 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| || ||| |||| || || || ||| || || Sbjct 56406 CCGCAACGTGCTCAAGTCCTTCCTCGAGGGCGTCATCCGCGACGCCGTCACCTACACTGA 56465 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| || | || | ||||| || | || || || || Sbjct 56466 ACACGCCAAGCGCAAGACAGTCACTTCTCTCGACGTTGTCTACGCTCTCAAGCGCCAGGG 56525 Query 16672 CCGTA 16676 ||||| Sbjct 56526 CCGTA 56530 >seq2433 Length=27649 Score = 102 bits (112), Expect = 1e-17 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| || || || |||||||| || ||||||||||| || | Sbjct 1430 CGCCAAGCGTCACCGAAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCTGCCA 1372 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||| ||||||||||| || ||||||||| |||| Sbjct 1371 TCCGTCGTCTTGCTCGTCGTGGCGGTGTCAAGCGTATCTC 1332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072196501505