Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1055 212 8e-50 seq2158 107 2e-18 >seq1055 Length=3912 Score = 212 bits (234), Expect = 8e-50 Identities = 585/894 (65%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| ||||| | |||| |||| |||||| |||| || || | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || || | | | ||||| ||||| || | ||||||| |||| || || | || Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | || | ||| || ||||| ||||| || || |||||| | | Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||||| |||||| || |||| ||| || || | | ||||| || ||||| || ||| Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCC 1937 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | ||||| |||||||| || | || | | ||| || | ||| ||||| || Sbjct 1936 TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAG 1877 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 || ||||| || | || ||| ||| ||||||| ||| | || || Sbjct 1876 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCG 1817 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || | || ||||| || || || || | ||||| |||||||| || Sbjct 1816 ATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 1757 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 || || || || |||||| || || || ||| || |||||| | | ||||| Sbjct 1756 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 1697 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||| || | ||| ||||| || || || || |||| | || | |||||||| || Sbjct 1696 GCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 1637 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 ||||| || || | ||| || || || || || || ||||||| ||| ||| Sbjct 1636 TCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGC 1577 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 || || | ||| | | |||| ||| || | || ||| || |||| | || || Sbjct 1576 TGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTG 1517 Query 63798 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 63857 || || || || | ||| |||||| || ||||| | ||| |||||||||||| || Sbjct 1516 AAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTTCA 1457 Query 63858 TTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTT 63917 || ||| | || || ||| ||| | || || || |||| | | || || Sbjct 1456 GCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGTTC 1397 Query 63918 TTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTC 63976 || || || ||||||| | | || || || || || | ||| | || || |||| Sbjct 1396 TTTGGGTTGACATAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGTTTG 1338 Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 |||||| || || || || |||||||| || || ||||||||||| || ||||| Sbjct 1337 CTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 109 bits (120), Expect = 7e-19 Identities = 208/303 (69%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | ||||||||| |||||||| || || | | || || ||||||||||| Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 62101 || || || |||||||| |||| ||| || |||||||| || | ||| || | Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 3286 Query 62102 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62161 ||| ||| | ||||| || | |||||| || ||||||||||| || | || || Sbjct 3285 CGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGC 3226 Query 62162 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62221 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 3225 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 3166 Query 62222 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62278 |||| |||| | ||| | | || || ||||| ||||| || || || || | ||||| Sbjct 3165 ATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGTTCTT 3106 Query 62279 GAT 62281 || Sbjct 3105 CAT 3103 >seq2158 Length=8959 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| ||| || || ||||| | || ||||||||||| || |||||| Sbjct 2120 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGT 2179 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || ||||| || ||||| ||||| || || ||||| Sbjct 2180 CCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 2239 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || || || || ||||||||||||| ||| Sbjct 2240 ATACCCTCGACAGCAGCAAAGGCAACAAG 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921620230600