Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1055 219 1e-51 >seq1055 Length=3912 Score = 219 bits (242), Expect = 1e-51 Identities = 412/597 (69%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | |||||| | || | || ||||| || | ||| || | ||| ||| Sbjct 1509 TTCGGCTTCAAGACGCTTGAAAGGTCATACCTGCTACGAACCAACGGCAAGGTTGCCGAA 1568 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||||||| ||||||| ||||| | |||||||| || ||| ||||| Sbjct 1569 CGGCCACAGCATATGATAATGCGAGTTGCGGTCGGTATCCACGGCGAGGACGTTGAGAAA 1628 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAACAA 363568 | ||||||||||| || || | || | | || ||||| || ||| | || || Sbjct 1629 GTAATTGAAACATACAATCTCAT--GTCCCAGAAATACTTCACCCATGCCTCTCCCACCC 1686 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | |||||| ||||| | | || || ||| |||| ||||| || | | ||||||| Sbjct 1687 TCTTCAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGG 1746 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||| ||||||| |||||||| |||| |||||| | || || |||| || Sbjct 1747 AGGACAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTG 1806 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGG 363746 | || || || || | | || ||||| | | ||||| || | | | ||||| || Sbjct 1807 CCGGAGGTATCGGCCTTAACG-TCCACCGTATCCGTGCCACCGGATCCT-ACATTGCTGG 1864 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || | ||| || || | || ||||||||||||||||| |||| || || || Sbjct 1865 AACCAACGGCTCCTCCAACGGAATTGTACCCATGCTTCGTGTGTTCAACAACACCGCCAG 1924 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || ||||||||||| || ||||| || || |||||||| || || ||||| Sbjct 1925 ATATGTCGACCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATG 1984 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||||| ||| | |||||||| ||||| ||||| || ||| ||||| || ||| | || Sbjct 1985 GCATGCTGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCG 2044 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||| |||||||| |||| || || ||| | |||| || |||||||| || || Sbjct 2045 TGCCCGTGATCTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGA 2101 Score = 188 bits (208), Expect = 2e-42 Identities = 685/1059 (65%), Gaps = 20/1059 (2%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||||||||||||| ||||| | || | |||| ||||| |||| || | |||| Sbjct 2293 GCCCAGAAGCTATGGTACGCCATTCTTGAGGCCCAGACGGAGACTGGAAACCCTTTTATG 2352 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||||| |||||||| ||| ||||||| || |||||||||| || | | || Sbjct 2353 CTTTACAAGGATTCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCC-GTAG 2411 Query 364231 AGCAAC-CTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 ||| || || || || || ||||||| ||||| || || ||| ||| || || || Sbjct 2412 CTCAAATCTTTGCACTGAAATCGTTGAATATACCGCCCCAGATGAGGTTGCAGTTTGCAA 2471 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCA-----G 364344 | | || || ||||| ||||| | ||||| | | || | ||| || | | Sbjct 2472 CTTGGCATCTATCGCCCTTCCCACCTTTGTGGATGCTGTTCGCGGTGAATACGATTTTGG 2531 Query 364345 CAT-CTTTATGACGTAACCTATCATGCTACTTGC---AATCTCGACAAGGTT-ATCGACA 364399 || || |||| || || ||| | | ||| || || || ||| | || || Sbjct 2532 CAAACTCCATGAAGTTAC---TCAGG-TCGTTGTCAGAAACTTGAACAGGATCATAGATG 2587 Query 364400 AGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 ||| | || || || || || ||| || ||| | |||||||| || |||| | Sbjct 2588 GGAACCACTACCCGGTTGAAGAGGCACGA-CGAAGCAATTTCCGTCATCGTCCCATTGCT 2646 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTAT-GATGCTCAAGATGGCATTTGATTCGCC 364517 | || || ||||| || ||||| | ||| | | | || | || | || || || || Sbjct 2647 GTCGGCGTCCAGGGACTTGCTGATGCTTTCCTCGCTCTTCGAT-TGCCCTTCGACTCACC 2705 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || || || | || | | ||||| || || | || ||| || |||| || Sbjct 2706 CGAAGCCAAGCTTTTGAACACCCAAATCTTCGAGACCCTTTACCATGCTGCGTTGACCGC 2765 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 |||||||| | || || | | || ||||| | |||||||| |||||| |||| Sbjct 2766 ATCGTGTGAGCTTGCCAAGGTCGATGGTCCATACTCCTCCTATGAGGGTTCCCCTGTTTC 2825 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697 ||||| | | || | ||| | ||||| || |||||| | | || ||| ||||||| Sbjct 2826 TCAGGGTATCCTTCAATACGATATGTGGAACGTAACGCCAACCGACCTCTGGGACTGGGA 2885 Query 364698 TACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCAT 364757 | || | | | ||||| ||| || ||| | | | |||||||| Sbjct 2886 TGGTCTTAAAGCTGAGATCTCCAAGCACGGTGTCCGTAACAGCTTACTACTTGCGCCCAT 2945 Query 364758 GCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG 364817 ||| || || || ||||| || || |||||||||||| ||||| | || Sbjct 2946 GCCAACTGCCAGCACCAGTCAGATTCTTGGCTTCAACGAGTGCTTTGAACCTTACACCTC 3005 Query 364818 CAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGT 364877 ||| | || |||||||| || ||| | || || || | || || || || || | Sbjct 3006 CAACATCTACTCACGCCGTGTACTTGCTGGCGAGTTCCAAGTCGTCAACCCGTGGCTTCT 3065 Query 364878 CAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGC 364937 ||| || || ||||| ||| |||||| |||| ||||||||| ||||||||| | Sbjct 3066 CAAAGACCTAGTCGACCTCGGCCTGTGGTCCGACAATATGAAGAACCGTATCATCGCTGA 3125 Query 364938 TAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAAC 364997 |||||| | || ||||| || | |||| |||| | ||| || | ||||| || Sbjct 3126 CGGTGGTTCCATCCAAAACATCCCTAACATCCCAGCAGATATCAAGGCTCTGTACAAGAC 3185 Query 364998 CGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTAT 365057 ||| ||||||||||| || ||| | || | ||||| || ||||| || || || || Sbjct 3186 CGTGTGGGAAATTTCTCAACGTACTATTGTTCAGATGGCCGCTGATCGAGGCGCCTTCAT 3245 Query 365058 CTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATC 365117 | ||| || ||| | ||| | | ||| |||| ||| | ||| | || Sbjct 3246 CGACCAGTCTCAATCGCTCAACATCCACTTGAAAGAGCCGACCATGGGAAAGATCACCAG 3305 Query 365118 CATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| ||| ||| ||||| |||||| ||||| || Sbjct 3306 TATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACCGG 3344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303298743068870