Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1409 120 3e-22 seq2769 98.7 9e-16 >seq1409 Length=7126 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| ||||| || ||||| | || |||||| || ||||||||||| | Sbjct 694 CCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGAC 635 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||| || ||||| |||| | |||||||||||| || ||| Sbjct 634 AGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 575 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || ||| |||| || | Sbjct 574 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACC 515 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | |||||| || || || || || ||||| ||||||||| || Sbjct 514 TCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATGCCT 464 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||| || | || | || || ||||||||||||||||| ||| Sbjct 467 GCCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGA 408 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | |||||| ||||| || || ||| |||| | ||| |||||||| || || Sbjct 407 CAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGG 348 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||||||||| ||| || ||| | | || | || ||| |||| |||| Sbjct 347 GATGCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGAC 288 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | || | ||| || ||||| |||||||| |||| Sbjct 287 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGA 250 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| |||||||| || ||||| || ||| Sbjct 172 GCCACCACGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 113 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| || || || |||||| |||| | ||||||||||| || || Sbjct 112 CAGCGTCCGGCCGTCCTCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGG 53 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 52 GATGCCCTCCTTGTC 38 >seq2769 Length=18169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||| |||||||| ||||||||||| || Sbjct 11234 CCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 11175 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| |||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 11174 AGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGA 11115 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 11114 ATTCCCTCCTTGTC 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993417974400