Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1055 203 4e-47 seq2158 102 1e-16 >seq1055 Length=3912 Score = 203 bits (224), Expect = 4e-47 Identities = 583/894 (65%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| ||||| | |||| ||| |||||| |||| || || | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || || | | | ||||| ||||| || | ||||||| |||| || || | || Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | || | ||| || ||||| ||||| || || |||||| | | Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||||| |||||| || |||| ||| || || | | ||||| || ||||| || ||| Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCC 1937 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||||| |||||||| || | || | | ||| || | ||| || ||||| Sbjct 1936 TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAG 1877 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 | || ||||| || | || ||| ||| ||||||| ||| | || || Sbjct 1876 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCG 1817 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || | || ||||| || || || || | || || ||||| || || Sbjct 1816 ATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 1757 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 ||||| || ||| |||||| || || || ||| || |||||| | | ||||| Sbjct 1756 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 1697 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 ||||| || | ||| ||||| || || || || |||| | || | |||||||| || Sbjct 1696 GCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 1637 Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 ||||| || || | ||| || || || || || || ||||||| ||| ||| Sbjct 1636 TCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGC 1577 Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63652 || || | ||| | | |||| ||| || | || ||| || |||| | || || Sbjct 1576 TGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTG 1517 Query 63653 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 63712 || || || || | ||| |||||| || ||||| | ||| |||||||||||| || Sbjct 1516 AAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTTCA 1457 Query 63713 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTT 63772 || ||| | || | ||| ||| | || || || ||| | | || || Sbjct 1456 GCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGTTC 1397 Query 63773 TTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTC 63831 || || |||||||||| | | || || || || || | ||| | || || |||| Sbjct 1396 TTTGGGTTGACATAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGTTTG 1338 Query 63832 TTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 ||||| || || || || |||||||| || || ||||||||||| || ||||| Sbjct 1337 CTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 114 bits (126), Expect = 2e-20 Identities = 209/303 (69%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | ||||||||| |||||||| || || | | || || ||||||||||| Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 61956 || || || |||||||| |||| ||| || |||||||| || | ||| || | Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 3286 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 ||| ||| | ||||| || | |||||| || ||||||||||| || | || || Sbjct 3285 CGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGC 3226 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076 ||||| | | ||| || ||| | ||||||||| | || || || | ||| || Sbjct 3225 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 3166 Query 62077 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 |||| |||| | ||| | | || || ||||| ||||| || || || || | ||||| Sbjct 3165 ATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGTTCTT 3106 Query 62134 GAT 62136 || Sbjct 3105 CAT 3103 >seq2158 Length=8959 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| |||||| || ||||| | || | ||||||||| || |||||| Sbjct 2120 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGT 2179 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || ||||| || || || || |||||| Sbjct 2180 CCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 2239 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 || || || || || |||||||||| ||| Sbjct 2240 ATACCCTCGACAGCAGCAAAGGCAACAAG 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633605981486000