Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1055 203 4e-47
seq2158 102 1e-16
>seq1055
Length=3912
Score = 203 bits (224), Expect = 4e-47
Identities = 583/894 (65%), Gaps = 2/894 (0%)
Strand=Plus/Minus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|| ||||| ||||| | |||| ||| |||||| |||| || || | | | |
Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112
|| || || | | | ||||| ||||| || | ||||||| |||| || || | ||
Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057
Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172
||||| | || | ||| || ||||| ||||| || || |||||| | |
Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997
Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232
| ||||| |||||| || |||| ||| || || | | ||||| || ||||| || |||
Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCC 1937
Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292
|| || | ||||| |||||||| || | || | | ||| || | ||| || |||||
Sbjct 1936 TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAG 1877
Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352
| || ||||| || | || ||| ||| ||||||| ||| | || ||
Sbjct 1876 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCG 1817
Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412
|| || || || | || ||||| || || || || | || || ||||| || ||
Sbjct 1816 ATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 1757
Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472
||||| || ||| |||||| || || || ||| || |||||| | | |||||
Sbjct 1756 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 1697
Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532
||||| || | ||| ||||| || || || || |||| | || | |||||||| ||
Sbjct 1696 GCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 1637
Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592
||||| || || | ||| || || || || || || ||||||| ||| |||
Sbjct 1636 TCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGC 1577
Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63652
|| || | ||| | | |||| ||| || | || ||| || |||| | || ||
Sbjct 1576 TGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTG 1517
Query 63653 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 63712
|| || || || | ||| |||||| || ||||| | ||| |||||||||||| ||
Sbjct 1516 AAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTTCA 1457
Query 63713 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTT 63772
|| ||| | || | ||| ||| | || || || ||| | | || ||
Sbjct 1456 GCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGTTC 1397
Query 63773 TTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTC 63831
|| || |||||||||| | | || || || || || | ||| | || || ||||
Sbjct 1396 TTTGGGTTGACATAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGTTTG 1338
Query 63832 TTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885
||||| || || || || |||||||| || || ||||||||||| || |||||
Sbjct 1337 CTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284
Score = 114 bits (126), Expect = 2e-20
Identities = 209/303 (69%), Gaps = 5/303 (2%)
Strand=Plus/Minus
Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897
|||| ||| | ||||||||| |||||||| || || | | || || |||||||||||
Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345
Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 61956
|| || || |||||||| |||| ||| || |||||||| || | ||| || |
Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 3286
Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016
||| ||| | ||||| || | |||||| || ||||||||||| || | || ||
Sbjct 3285 CGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGC 3226
Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076
||||| | | ||| || ||| | ||||||||| | || || || | ||| ||
Sbjct 3225 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 3166
Query 62077 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133
|||| |||| | ||| | | || || ||||| ||||| || || || || | |||||
Sbjct 3165 ATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGTTCTT 3106
Query 62134 GAT 62136
||
Sbjct 3105 CAT 3103
>seq2158
Length=8959
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || ||||| |||||| || ||||| | || | ||||||||| || ||||||
Sbjct 2120 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGT 2179
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|||||||| || |||||||| || ||||| || ||||| || || || || ||||||
Sbjct 2180 CCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 2239
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAG 32809
|| || || || || |||||||||| |||
Sbjct 2240 ATACCCTCGACAGCAGCAAAGGCAACAAG 2268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633605981486000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |