Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2158 239 8e-58 seq1055 122 2e-22 >seq2158 Length=8959 Score = 239 bits (264), Expect = 8e-58 Identities = 337/462 (73%), Gaps = 15/462 (3%) Strand=Plus/Minus Query 42690 ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 || |||| | || | || || |||||| | || |||||||| || |||||| ||| || Sbjct 2283 ACCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCC 2224 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAA 42808 |||||||||||||||||||| ||| || ||| || |||||||||||||||||||| || Sbjct 2223 TTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTC-ATGCCCGGACTCACCTTCTCCAA 2165 Query 42809 CGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAG 42868 |||||| ||| | | ||||| || || || | || ||||||||||| |||||||| Sbjct 2164 CGAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTC--- 2108 Query 42869 CCACCTCAGGCACAA--GCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGT 42925 ||||||| || | ||||| || | ||| |||||||||||| || || || Sbjct 2107 TCACCTCA---ACTATCGCCCTGACCCCAGTGCCGTCGAGGCCATCATCACTGAAGCAGT 2051 Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACC 42984 |||||| |||||||||| || | | || ||| ||| |||| |||||||||| Sbjct 2050 CACCATCGAGCAGGAGTTCCTGACTGATGCCCTCCCCTGTG-CCCTTCTCGGCATGAATG 1992 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGT 43043 | |||||||| ||||||| ||| ||||||||| || || || | ||| Sbjct 1991 CTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTA 1932 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | || | |||||||||| | |||||||||||||||||| || ||||| | | Sbjct 1931 ATAAGAAG-TTCTACAACACAACCAACCCCTTCGACTTTATGGACAATATCTCCCTTGCT 1873 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| ||||||||||| || | || |||||| Sbjct 1872 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAG 1831 >seq1055 Length=3912 Score = 122 bits (134), Expect = 2e-22 Identities = 290/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| | || || |||| |||||| |||||| || | || | || || Sbjct 2093 CTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGGGCACGGACTTCTTC 2034 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| |||||| | || || | || |||||||| || | ||||| ||||||| Sbjct 2033 CTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCATGCCATGGCTCCAG 1974 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGC 245187 ||||| ||| | ||| || || ||||||||||| |||||||| || || || Sbjct 1973 GTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACATATCTGGCGGTGTT 1914 Query 245188 GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 |||||| | || || | || || || ||||| ||| ||||||||| || ||||| Sbjct 1913 GTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTA 1854 Query 245248 GGCGCCCTTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGG 245303 || || || | | || | | | ||||| | ||| | || ||||| ||| | Sbjct 1853 GGATCCGGTGGCAC---GGATAC-GGTGGACGTTAAGGCCGATACCTCCGGCAGTCTTTG 1798 Query 245304 AGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGT 245363 |||| | || ||| |||| | ||||| || || || || |||||| |||||||| Sbjct 1797 AGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGT 1738 Query 245364 TGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGC 245423 | || |||||||| | || || |||| ||| | | | ||||| || ||||| Sbjct 1737 CAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGGGTGGGAG 1678 Query 245424 TGGCGTGGGTAAAGTA 245439 ||| ||||| ||||| Sbjct 1677 AGGCATGGGTGAAGTA 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944300423071600