Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1409 152 1e-31 seq2158 98.7 2e-15 >seq1409 Length=7126 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||| | |||||| || || ||||| || || || | ||||| || ||||| Sbjct 679 AGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGACAGCGTCCGGCCGTCC 620 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||||||||| ||||| |||||||| || |||||| ||||| || ||| Sbjct 619 TCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCC 560 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || | || ||||| ||||| | ||||| |||||||| || |||||||| || Sbjct 559 TGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACCTCCAGCGTGATGGTT 500 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| |||||||| Sbjct 499 TTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Score = 132 bits (146), Expect = 1e-25 Identities = 141/185 (76%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||||| ||||| | ||||| || | |||||||| ||||| Sbjct 431 TTCCTTTTGAATGTTGTAGTCGGACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAA 372 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || || ||||| ||| |||||||| |||||||| || | ||||| Sbjct 371 GATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCTTTGTCCTGGATCTTGGTCTTCAC 315 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||||| ||||| || || || ||||| ||||| ||||||||||| || Sbjct 314 GTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTT 255 Query 288459 GACGA 288463 |||| Sbjct 254 CACGA 250 Score = 114 bits (126), Expect = 3e-20 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| ||||| |||| ||| || || ||||| ||||||| Sbjct 175 CATG-CCACCACGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGT 117 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||||| || ||||| || | ||||||||||||||||||||| ||||| || Sbjct 116 CGGACAGCGTCCGGCCGTCCTCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTG 57 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 |||||| || || || || ||||| || | || ||||| || || | ||||| Sbjct 56 GTGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCT 2 >seq2158 Length=8959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 |||||||| || | ||| | |||||| | ||| || |||| ||| | | |||| Sbjct 2058 GAAGCAGTCACCATCGAGCAGGAGTTCCTGACTGATGCCCTCCCCTGTGCCCTTCTCGGC 1999 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--G 269215 |||||||| | |||||| ||| || || || ||||| || ||| | |||| || | Sbjct 1998 ATGAATGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGG--CTTCTCGTTG 1941 Query 269216 CACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTT 269275 | || ||| || |||| | ||||| | | || ||||||| ||||||||| || | Sbjct 1940 CTCTTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGACTTTATGGACAATATCT 1881 Query 269276 CGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTG 269335 | || | || ||||| ||||||||||| |||||||| | || || || |||||| Sbjct 1880 CCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTG 1821 Query 269336 TAATG 269340 | ||| Sbjct 1820 TCATG 1816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179604749452230