Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2158 131 2e-25 >seq2158 Length=8959 Score = 131 bits (144), Expect = 2e-25 Identities = 318/472 (67%), Gaps = 25/472 (5%) Strand=Plus/Plus Query 125748 CCAGCTTGCCG-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||||| | | || || ||||| ||||||||||||||||| ||||| || | | | | Sbjct 1823 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAG 1882 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 125864 ||||| |||||||| || || ||||| ||| ||| | | || || ||| | | Sbjct 1883 ATATTGTCCATAAAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCA 1942 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 ||| || | ||| | |||| |||||||||||| | |||| || || ||||| | Sbjct 1943 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGC 2000 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 ||| ||| ||| ||||| || || | |||| ||| ||| || || ||||| Sbjct 2001 CGAGAAGGGCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAG 2060 Query 125985 GCACGATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGA----AGAGT 126040 | |||||| | | || ||| |||| | ||| | ||| ||| |||| Sbjct 2061 TGATGATGGCCTCGACGG----CACTGG-GGTC-AGGGCG-ATAGT--TGAGGTGAGAGA 2111 Query 126041 TC------CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAG 126094 | || |||||| || ||| || || |||||||||||||| ||||| || ||| Sbjct 2112 ACAGAAGGCA-GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAG 2170 Query 126095 AAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCC 126154 ||| ||||| ||||||||||| |||||||| | |||||| || | || || || Sbjct 2171 AAGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCG 2230 Query 126155 GAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 |||||| || ||||| ||| || || |||| || |||| || |||| Sbjct 2231 CTGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGG 2282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597329071167800