Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1409 181 1e-40 >seq1409 Length=7126 Score = 181 bits (200), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || |||| ||||||||||| ||||||||||| || || |||||||||| Sbjct 695 ACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGA 636 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| ||||| |||| || ||||| || || || || ||||| ||||||||||| | ||| Sbjct 635 CAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGG 576 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| ||| |||| ||| | | | ||||||||| ||||| | Sbjct 575 GATACCTTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCTATCGTGTCGCTGGATTCTA 517 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||||||||| || ||||| || ||||| ||||| Sbjct 516 CCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || | ||| |||| |||| || ||||| || |||||||| Sbjct 430 TCCTTTTGAATGTTGTAGTCGGACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAG 371 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | || || |||||| || | || || | ||| Sbjct 370 ATGAGACGTTGCTGGTCTGGCGGGATGCCTTCTTTGTCC-TGGATCTTGGTCTTCACGTT 312 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||||| ||||| || || | |||||||| ||||| || || || || || Sbjct 311 GTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543190494324400