Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1409 118 1e-21 seq1055 109 5e-19 seq2158 93.3 4e-14 seq2769 84.2 2e-11 >seq1409 Length=7126 Score = 118 bits (130), Expect = 1e-21 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||||||| |||| || ||||| | | |||||| || |||||||| || | Sbjct 694 CCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGAC 635 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| ||||| || | | |||| |||||||| ||||| || || Sbjct 634 AGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 575 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || | ||||| || | ||| || | |||||| | || || | Sbjct 574 ATACCTTCCTTGTC-CTGGATCTTTGTCTTGACGTTG-TCTATCGTGTCGCTGGATTCTA 517 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| | ||| | ||||| || || || || || || || ||||||||| || Sbjct 516 CCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATGCCT 464 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | |||| ||||||||||||||||||||| Sbjct 467 GCCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGA 408 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||||||||| ||||| || | |||| ||||| || ||||| || || Sbjct 407 CAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGG 348 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| || || || | |||| | | ||||||| | || || Sbjct 347 GATGCCTTCTTTGTCCTGGATCTTG-GTCTTCACGTTGT-CGATGGTGTCGCTGGATTCG 290 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||||| | || | || || || ||||||||||| || Sbjct 289 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 >seq1055 Length=3912 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 154026 TCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGA 154082 || || ||||| || || | ||||| || | |||||| |||||| |||||||| Sbjct 1993 TCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGG 1934 Query 154083 TCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTG 154142 ||||| | | | | |||||||| || || | ||||||| | | ||| | | || | Sbjct 1933 TCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAG 1874 Query 154143 CCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATG 154202 |||||||| | || | | ||| ||| || | | || ||||||| ||| || Sbjct 1873 CCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCGATA 1814 Query 154203 CCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATG 154262 || ||| | |||||| || ||| ||| ||| || |||||| || ||||| Sbjct 1813 CCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATA 1754 Query 154263 CTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCG-TTCCCGC 154321 || || || | | | | | ||| || ||| ||||||||| |||| | |||| || Sbjct 1753 CTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGC-TGCGGGGTTCCGGC 1695 Query 154322 CGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTC 154381 |||||||||||| || || || || ||| ||| ||| | ||| ||||| Sbjct 1694 ATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTC 1635 Query 154382 GATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTG 154441 || | | || | || |||||||| || |||| ||| || ||||| | ||| ||||| Sbjct 1634 AATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGCTG 1575 Query 154442 CGGACGTTCGGCGAC 154456 || |||||||| || Sbjct 1574 TGGCCGTTCGGCAAC 1560 >seq2158 Length=8959 Score = 93.3 bits (102), Expect = 4e-14 Identities = 303/463 (65%), Gaps = 21/463 (5%) Strand=Plus/Minus Query 52384 CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC--CGG 52441 |||| | ||| ||||| | || ||||| || |||||||| | |||| ||| ||| Sbjct 2285 CCACCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGG--TATTTTCTTCAGCGG 2228 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 | ||| ||| ||||||| | | || | | || | |||||||| || || ||| Sbjct 2227 CTCCTTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTC 2168 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACA 52560 |||||| | || || || |||||||| || ||||| || ||||| ||||| || | Sbjct 2167 CAACGAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTT--- 2111 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGAT---CCT-GAG--CATGTTCAAGG 52614 | | | ||| || | | | ||| | | | | ||| ||| ||| | Sbjct 2110 -----CTC-TCACCTCAACTATCGCC-CTGACCCCAGTGCCGTCGAGGCCATCATCACTG 2058 Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674 | || || | ||||| ||||||| | || | || || || | || || |||| Sbjct 2057 AAGCAGTCACCATCGAGCAGGAGTTCCTGACTGATGCCCTCCCCTGTGCCCTTCTCGGCA 1998 Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||| || || |||||| ||||||| ||||| || || ||| | || | || | Sbjct 1997 TGAATGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTC 1938 Query 52735 TCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 | || | |||| || |||| | ||| || || || |||||| |||| || || | Sbjct 1937 TTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGACTTTATGGACAATATCTCCC 1878 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| |||||||||||||| ||||||||||| || || || || Sbjct 1877 TTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTA 1835 >seq2769 Length=18169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | ||||||| ||||||||| ||||| || | Sbjct 11201 GACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCG 11142 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || || || || ||||| Sbjct 11141 AAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242022225200