Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1409 95.1 1e-14 seq2158 93.3 4e-14 >seq1409 Length=7126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| ||| || ||| | || || |||||||||||| Sbjct 436 GTTGATTCCTTTTGAATGTTGTAGTCGGACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCA 377 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| || || || ||||| || |||||| ||| || ||| Sbjct 376 GCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCTTTGTCCTGGATCTTGGTCTTC 317 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||| | ||||| || | || | || |||||||||||||| Sbjct 316 ACGTTGT-CGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGT 258 Query 127096 TTTTAC 127101 ||| || Sbjct 257 TTTCAC 252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||| |||||||| | ||| ||| || || || |||||||| | Sbjct 694 CCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGAC 635 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||||||||| || |||| | |||||||| || || || Sbjct 634 AGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 575 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||||| |||| || | ||||| | || || Sbjct 574 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTG-TCTATCGTGTCGCTGGATTCTAC 516 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | |||||||| || || || || || || ||||||||| || Sbjct 515 CTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATGCCT 464 >seq2158 Length=8959 Score = 93.3 bits (102), Expect = 4e-14 Identities = 240/363 (66%), Gaps = 17/363 (5%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| ||||| || |||||| || ||||| | ||||||||||| ||||| | Sbjct 2187 ATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGTGACGAAGGCCTACACACTGAT 2128 Query 47283 TTTGCCTG---TCTCTACTA-CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA---C 47335 |||||||| ||| | || || | | | ||| | ||| |||| | Sbjct 2127 TTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGCCCT-------GAC---CCCAGTGC 2078 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 |||| | ||| | | ||||| ||| |||| ||| |||||| | | || || || Sbjct 2077 CGTCGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCCTGACTGATGCCCT 2018 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 ||| | | | || ||||| || || | ||| | ||||||| || || ||||| Sbjct 2017 CCCCTGTGCCCTTCTCGGCATGAATGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGC 1958 Query 47456 CGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515 ||| | || |||||| || || ||| | ||| |||| || || ||||| Sbjct 1957 CGATAGGCTTCTCGTTGCTCTTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGA 1898 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 |||||| |||| || || || | |||||||||||||| ||||||||||| || || || Sbjct 1897 CTTTATGGACAATATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGA 1838 Query 47576 ATA 47578 || Sbjct 1837 TTA 1835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475481274748400