Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2158 136 5e-27 >seq2158 Length=8959 Score = 136 bits (150), Expect = 5e-27 Identities = 318/471 (68%), Gaps = 23/471 (5%) Strand=Plus/Plus Query 127221 CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | | || || || || ||||||||||||||||| ||||| ||| | ||| | Sbjct 1823 CCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAG 1882 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 ||||| |||||||| || || ||||| ||| ||| | | || || ||| | | Sbjct 1883 ATATTGTCCATAAAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCA 1942 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 ||| || | ||| | |||| |||||||||||| | |||| || || ||||| | Sbjct 1943 AC--GAGAAGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGC 2000 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||| ||| ||| ||||| || || | |||| ||| ||| ||| || ||||| Sbjct 2001 CGAGAAGGGCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAG 2060 Query 127458 GTACGATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGT 127513 | |||||| | | | ||| |||| | ||| | ||| ||| |||| Sbjct 2061 TGATGATGGCCTCGACGG----CACTGG-GGTC-AGGGCG-ATAGT--TGAGGTGAGAGA 2111 Query 127514 TCCACAG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 127568 | || |||| || ||| || || |||||||||||||| ||||| || |||| Sbjct 2112 ACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGA 2171 Query 127569 AGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAG 127628 || || || ||||||||||| |||||||| | |||||| || | || ||||| Sbjct 2172 AGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGC 2231 Query 127629 AGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 |||||| || ||||| ||| || || |||| || |||| ||| |||| Sbjct 2232 TGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGG 2282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482007860600