Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1055 84.2 3e-11 >seq1055 Length=3912 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGC-GTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || ||||| || |||| | ||| ||| | || | | ||||||||||||| Sbjct 3402 CTGGTCTACTGTGAATTGGATGGGAGCAGACG-CAGCCATGGTGCGGAGATAGTACATGC 3344 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || || || ||| ||| | |||||| | | || | || | | | Sbjct 3343 CGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCATGGTCG 3284 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || || ||| ||||| || || || ||||||||| |||||||| ||||| ||| Sbjct 3283 GCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATG-AAGGCGCCTCGATCAGCG 3225 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||||| | | ||| || || ||||| |||||||| |||||| ||| Sbjct 3224 GCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACA 3176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795122548939600