Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1409 161 2e-34 seq2769 91.5 3e-13 >seq1409 Length=7126 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||||||||| || |||||||| | ||||||||| | || ||| Sbjct 460 CGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGACAGCGTC 401 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || || ||||| ||||| |||||||||||||| |||||||| || || ||| Sbjct 400 CTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCT 341 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||||||| |||| |||||| | | ||| || || | Sbjct 340 TCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGA 281 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || || ||||||||||| Sbjct 280 GTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| |||| |||||| |||| || |||| || || || ||||| ||||| || || Sbjct 659 CTCCTTCTGGATGTTGTAATCAGACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAA 600 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 |||||||||||||||||| || || ||||| ||||| |||||| ||| ||| Sbjct 599 GATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 540 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | ||||| | | |||||| |||| |||||| || || ||||| || || || || Sbjct 539 GTCTATCGTGTCGCTGGATTCTACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGAC 480 Query 199618 AAAAATTTG 199626 || || || Sbjct 479 GAAGATCTG 471 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||| ||||| | || |||| || || Sbjct 156 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCC 97 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||| |||||||| || ||||||||||| || || || || || Sbjct 96 TCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 37 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| ||| |||| |||||| Sbjct 36 TGGATCTTGGTCTTGACGTTGTCGATGGTGTC 5 >seq2769 Length=18169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| || | ||||||||||| | ||| | || || Sbjct 11219 AGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCC 11160 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || ||||| ||||| |||||||| |||||||||||||| || |||||| || Sbjct 11159 TCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTC 11107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178871980295095