Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1409 163 3e-35 seq2769 86.0 7e-12 >seq1409 Length=7126 Score = 163 bits (180), Expect = 3e-35 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || || |||| || |||| |||| |||||| || |||||||| ||||| ||||| Sbjct 700 TAGTTACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAA 641 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || || || |||| |||||||| || || || || || | ||||||||||| Sbjct 640 TCAGACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCT 581 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGA 46539 | || | | ||||||||| |||||| |||||| ||| | | | ||||||||| || Sbjct 580 GGTGGGATACCTTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCTATCGTGTCGCTGGA 522 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| |||||||||||||||||| || || || || ||||| ||||| Sbjct 521 TTCTACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| || || || | || |||||||| || |||||||||| Sbjct 468 TGCCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGG 409 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | |||| |||||||| || || ||||| || | || |||||||| | || Sbjct 408 ACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCG 349 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || || |||||| |||||| |||| | ||| | | | |||||||| ||||| Sbjct 348 GGATGCCTTCTTTGTCCTGGATCTTGGTCTTCA-CGTTGTCGATGGTGTCGCTGGATTCG 290 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 || || | |||||||| ||||| ||||| ||||| || Sbjct 289 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || |||||||| || || || |||| ||||| || || || ||||| Sbjct 136 CTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCCTCGAGTTGTTTTCCTGCGAA 77 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || ||||||||| |||||| |||||| ||| Sbjct 76 GATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGT 18 Query 46522 CG-CCACCGTGTCGCT 46536 | | | |||||||| Sbjct 17 TGTCGATGGTGTCGCT 2 >seq2769 Length=18169 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || ||||| ||| |||| |||||||| || || ||||| Sbjct 11199 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCGAA 11140 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||| ||||||||||| | || | | ||||||||| || Sbjct 11139 GATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTAT 11098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565215189898200