Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2158 159 3e-34 seq1409 132 5e-26 seq2769 87.8 2e-12 >seq2158 Length=8959 Score = 159 bits (176), Expect = 3e-34 Identities = 356/518 (69%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||| || || || || || ||||| || || || || || || | Sbjct 1816 CATGACACCAGCTTTCTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 1875 Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGC 132706 | ||| || | ||| ||||| || |||||||||| |||||||||| | ||| | | Sbjct 1876 AAGGGAGAT-ATTGTCCATAAAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTAC 1934 Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCG 132765 | | || | ||||| ||||| ||||| |||||||| ||||| || ||||| | || | Sbjct 1935 CAAG-AG--CAACGAGAAGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAG 1991 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824 || | | | || || || |||| || || || || || || || |||||||||| Sbjct 1992 CATTCATG-CCGAGAAGG-GCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGT 2049 Query 132825 GACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGCACCAAATGCT 132883 ||| || || |||| ||| || ||| || | | | || || || | | || Sbjct 2050 GACTGCTTCAGTGATGATGGCCTCGACG-GCACTGGGGTCAGGGCGATAGTTGAGGTGAG 2108 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||||| | ||| ||||| || || | ||| ||||| | ||| || ||||||||| Sbjct 2109 AGAACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGG 2168 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||| || || || || ||||| || |||| |||||| || Sbjct 2169 AGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGC 2228 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CT 133062 | ||||| | |||||||| || || || || || ||||||| | |||| |||| | Sbjct 2229 CGCTGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGGTGGAAT 2288 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| || | |||||| || | ||||| |||||||| Sbjct 2289 TCTTATCTTG-GATCCATCGGATGGCCCAATCGGCCTT 2325 Score = 125 bits (138), Expect = 7e-24 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||||||| || || |||| ||||| | ||| ||||| ||| || ||| Sbjct 2450 TATGTGTCGATGAGGAGAGAGTATGTTTCGGAGTGAATGTTTTCCATCATGATCTGGAAG 2509 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || |||||||| || || ||||| ||||| | ||||||||| | || || Sbjct 2510 CCATAGAAGCACCGGGCTTCCGGTACCTGGACTTCGTTGCTGAAACGCTCAAGGAGGTTC 2569 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||| |||||||| ||| ||||||||| || |||| || || |||||| || Sbjct 2570 TCGTTAACGATGCCATCGGAGGCGGCGAAGAAAGCCAAGACATGGGAGATGAAGAATCGT 2629 Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | ||| || | | | ||||||| | | |||||||| || || | ||| ||| Sbjct 2630 TCATCGTCATTGAGCCTGTTGTTCCAGTCGTGAATATCCTTGGAGAGATCGATCTCTTCG 2689 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || || || |||||||| Sbjct 2690 GCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACAT 2724 >seq1409 Length=7126 Score = 132 bits (146), Expect = 5e-26 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||||||||||||||| | || || || ||| | Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||| |||| ||||| || || || || | |||| Sbjct 528 GACACGATAGACAACG--TCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACC 585 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || |||||||| || |||| || || || || |||| Sbjct 586 AGCAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACA 645 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| ||| |||||||||| ||||| ||| ||||||| Sbjct 646 ACATCCAGAAGGAGAGC-ACGTTGCATTTGGTCCTGCGGTTGCGAGGCGG 694 Score = 116 bits (128), Expect = 4e-21 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| ||||| || || ||||| |||||||| | || ||||| ||| ||||| | | Sbjct 250 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 309 Query 38314 A-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGC 38370 | |||| | |||| || |||| |||||||| || || |||||| ||||| || || | Sbjct 310 ACAACG--TGAAGACCAAGATCCAGGACAAAGAAGGCAT-CCCGCCAGACCAGCAACGTC 366 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 |||| | ||| || |||||||| || |||| | || || |||||||||||| |||| Sbjct 367 TCATCTTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAA 426 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| | || || || | || |||||| || | || ||| Sbjct 427 AGGAATCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGC 467 >seq2769 Length=18169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| || || | ||| || |||||||| || Sbjct 11101 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTCGAG 11160 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||| || || ||||||||||| || ||||| | || || || | ||||| Sbjct 11161 GACGGGCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCTC 11220 Query 38457 CGT 38459 ||| Sbjct 11221 CGT 11223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500152261654400