Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2281 145 1e-29 seq2126 136 5e-27 seq1606 129 7e-25 seq1055 125 9e-24 seq591 113 6e-20 >seq2281 Length=20370 Score = 145 bits (160), Expect = 1e-29 Identities = 341/512 (67%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || || ||||| || ||| || || ||||| | || || || || || Sbjct 20369 GGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTAGTAGCC 20310 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || || ||||| |||||||| ||||| || | ||| |||| |||| | | Sbjct 20309 TGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTGTTGACGGTGCCA 20250 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || ||| | || ||| |||||||| ||||| || || || || ||| Sbjct 20249 CCAAGGTAGGCCTCGGCGGTCTCACGCATCTTGGTAAGGACCATGGAGGAGATTTCCTCA 20190 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||||| ||| || || || || || || | | ||||| || |||| Sbjct 20189 GGGGTGAACTGCTTCTCCTCGCCCTTGAACTCGACCTGGACGATGGGCTTG-CCGCCCTT 20131 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | | || ||| | | | | ||||| ||| | ||||||| ||| ||| Sbjct 20130 CTCG--ACAATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGTTGAAC 20073 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||| || |||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 20072 TTGCGTCCAATGAGACGCTTAGCATCGAAGACGGTGTTGACAGGGTTCATGGCGACCTGG 20013 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || || || || ||||| || | || || || || ||| | || || Sbjct 20012 TTCTTTGCGGCATCTCCAATGAGACGCTC---GGTGTCTGTGAAGGCAACGAAGGAGGGA 19956 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || || || || |||||||| || || ||||| | |||||| | | ||| || Sbjct 19955 GTGGTACGGTTTCCCTGGTCGTTGGCGATGATTTCAATGCGGTCATCACGGAAGATACCC 19896 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACC 8142 ||||| || ||||| || || ||||| ||||| Sbjct 19895 ACGCAGGAGTACGTGGTACCCAAATCGATACC 19864 >seq2126 Length=9367 Score = 136 bits (150), Expect = 5e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 9030 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTGTTG 9089 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || | || || | ||| | || || || ||||| || || || Sbjct 9090 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGGATACGAGTAGAA 9149 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | || || || | || || || |||||||| | ||| || || Sbjct 9150 CCACCGACGAGGACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACA 9209 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 |||||||| ||||| ||||| | |||| || || ||||| ||||| ||| Sbjct 9210 CGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGGGCA 9269 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| ||||| || || || | || || || ||||||| || Sbjct 9270 CGGGTGATGGAGGTGTAGAAGTCAACACCCTCATAGAGAGAGTCGATCTCAATGGAGGTC 9329 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 || || | || || | || ||||| || ||||| || Sbjct 9330 TGGGCAGCAGACGAGAGAGTACGCTTAGCACGCTCGCA 9367 >seq1606 Length=48028 Score = 129 bits (142), Expect = 7e-25 Identities = 356/539 (66%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| || | || ||| || | |||||| | | || ||| Sbjct 5309 TCCTCGAAACGAGCACGGGTGATCTGGGCATTGAAGTCCTCACCGTCGAAGAGAGAGTCA 5368 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || | || || || | | || | || ||||| || ||||| || || || Sbjct 5369 ATCTCGACAGTAGTCTGGGTAGCGCTGGAAAGAGTACGCTTAGCACGCTCGCAAGCAGTG 5428 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | | || ||||| | | || ||| || | ||| ||||| || || | ||| Sbjct 5429 CGGAGTCTTCGGAGGGCTCTGGAGTCACCAGAGAGATCCTTCTTGGTCTTGCGGGTGAAC 5488 Query 7427 TCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 || | |||||| |||| |||| | | ||||| || | |||||| | || || || Sbjct 5489 TCCTTCTTGAAGTGGTCGA-GGAGGTTGGTGTCGAAGTCCTGACCACCAAGATGGGTGTC 5547 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| || ||||| |||| ||| || | ||||| | | || ||||| || Sbjct 5548 ACCGGCGGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGAGAGACATCGAA 5607 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTC---GTCTTTGTTCTTA- 7600 ||||||||||| || || | ||||| || || || | || | ||| | | | Sbjct 5608 AGTACCACCACCGAGATCGTAGATGAGGACATTGCGCTCCTTCTCGGACTT--TCCAGAG 5665 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||| || || || || || || || || || || ||||| ||| ||| || Sbjct 5666 CCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGAACGTTGAGA 5725 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || ||||| | | ||||| || || || |||| || ||||| |||||||| ||| Sbjct 5726 CCGGCAATGGCACCAGCATCCTTGGTGGCCTGTCTCTGGTTGTCGTTGAAGTAGGCTGGG 5785 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | ||| |||| ||||| | | || || | |||||||| Sbjct 5786 ACAGTGATGACAGCCTTGGAGACACTCTTTCCGAGCTTAGTCTCGGCAACTTCTTTCAT 5844 >seq1055 Length=3912 Score = 125 bits (138), Expect = 9e-24 Identities = 340/516 (66%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 105484 TCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGAC 105543 |||||||||| ||||| || || | | || |||| || || || || | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 105544 CAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAG 105603 |||| |||| |||||| || |||||||||||||| ||| |||||| ||| | ||| Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057 Query 105604 AGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGA 105663 || || || | | ||||| | || || ||| || | || || || || | Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997 Query 105664 ATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCC 105717 | ||| || |||||||| || | |||| |||| || | | | ||||| || Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAA-AGGCAC--CAGGACGCTTGTTGCCG 1940 Query 105718 GCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCG 105777 | || | ||||||||| ||||| ||| |||| || | ||| || | ||| || | | Sbjct 1939 CCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTG 1880 Query 105778 GATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAAC 105837 || | || || |||||| ||| | ||| | ||||| | | ||| |||| | Sbjct 1879 GAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGG 1820 Query 105838 CCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCG 105897 || ||||| || || ||| ||| ||||| || | ||| ||||| ||||| Sbjct 1819 CCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1760 Query 105898 TCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGT 105956 |||||||| || ||||| | |||| ||||| || || | |||||| || ||| || || Sbjct 1759 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGG-CTGCGGGGT 1701 Query 105957 ACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 || |||||||| || || || | ||||| |||| Sbjct 1700 TCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAA 1665 >seq591 Length=274 Score = 113 bits (124), Expect = 6e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || || || | |||||||| |||||||| Sbjct 186 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATACCC 127 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 126 TCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGAACG 67 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || | ||||||||||||||||| || || || || || || || || Sbjct 66 TTGCGCTCACCCTCGGTCTTCTTATCGAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCG 7 Query 7637 TTAAT 7641 || || Sbjct 6 TTGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635106719859400