Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2281 145 1e-29
seq2126 136 5e-27
seq1606 129 7e-25
seq1055 125 9e-24
seq591 113 6e-20
>seq2281
Length=20370
Score = 145 bits (160), Expect = 1e-29
Identities = 341/512 (67%), Gaps = 6/512 (1%)
Strand=Plus/Minus
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
|| || || || ||||| || ||| || || ||||| | || || || || ||
Sbjct 20369 GGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTAGTAGCC 20310
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|| || || || ||||| |||||||| ||||| || | ||| |||| |||| | |
Sbjct 20309 TGACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTGTTGACGGTGCCA 20250
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|| || || | || ||| | || ||| |||||||| ||||| || || || || |||
Sbjct 20249 CCAAGGTAGGCCTCGGCGGTCTCACGCATCTTGGTAAGGACCATGGAGGAGATTTCCTCA 20190
Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870
| | ||||| ||| || || || || || || | | ||||| || ||||
Sbjct 20189 GGGGTGAACTGCTTCTCCTCGCCCTTGAACTCGACCTGGACGATGGGCTTG-CCGCCCTT 20131
Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930
| | | || ||| | | | | ||||| ||| | ||||||| ||| |||
Sbjct 20130 CTCG--ACAATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCGTCGTTGAAC 20073
Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990
|| | ||| || |||||||| ||||| || || ||||| ||||||||||| |||
Sbjct 20072 TTGCGTCCAATGAGACGCTTAGCATCGAAGACGGTGTTGACAGGGTTCATGGCGACCTGG 20013
Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050
||||| || || || || || ||||| || | || || || || ||| | || ||
Sbjct 20012 TTCTTTGCGGCATCTCCAATGAGACGCTC---GGTGTCTGTGAAGGCAACGAAGGAGGGA 19956
Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110
|| || || || || |||||||| || || ||||| | |||||| | | ||| ||
Sbjct 19955 GTGGTACGGTTTCCCTGGTCGTTGGCGATGATTTCAATGCGGTCATCACGGAAGATACCC 19896
Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACC 8142
||||| || ||||| || || ||||| |||||
Sbjct 19895 ACGCAGGAGTACGTGGTACCCAAATCGATACC 19864
>seq2126
Length=9367
Score = 136 bits (150), Expect = 5e-27
Identities = 233/338 (69%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 9030 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTGTTG 9089
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || | || || | ||| | || || || ||||| || || ||
Sbjct 9090 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGATCTTGGGGATACGAGTAGAA 9149
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|||||||| | || || || | || || || |||||||| | ||| || ||
Sbjct 9150 CCACCGACGAGGACAATCTCGTGGACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACA 9209
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
|||||||| ||||| ||||| | |||| || || ||||| ||||| |||
Sbjct 9210 CGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGGGCA 9269
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| ||||| || || || | || || || ||||||| ||
Sbjct 9270 CGGGTGATGGAGGTGTAGAAGTCAACACCCTCATAGAGAGAGTCGATCTCAATGGAGGTC 9329
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359
|| || | || || | || ||||| || ||||| ||
Sbjct 9330 TGGGCAGCAGACGAGAGAGTACGCTTAGCACGCTCGCA 9367
>seq1606
Length=48028
Score = 129 bits (142), Expect = 7e-25
Identities = 356/539 (66%), Gaps = 9/539 (2%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||| ||||| |||||||| || | || ||| || | |||||| | | || |||
Sbjct 5309 TCCTCGAAACGAGCACGGGTGATCTGGGCATTGAAGTCCTCACCGTCGAAGAGAGAGTCA 5368
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366
|| || | || || || | | || | || ||||| || ||||| || || ||
Sbjct 5369 ATCTCGACAGTAGTCTGGGTAGCGCTGGAAAGAGTACGCTTAGCACGCTCGCAAGCAGTG 5428
Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426
|| | | || ||||| | | || ||| || | ||| ||||| || || | |||
Sbjct 5429 CGGAGTCTTCGGAGGGCTCTGGAGTCACCAGAGAGATCCTTCTTGGTCTTGCGGGTGAAC 5488
Query 7427 TCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485
|| | |||||| |||| |||| | | ||||| || | |||||| | || || ||
Sbjct 5489 TCCTTCTTGAAGTGGTCGA-GGAGGTTGGTGTCGAAGTCCTGACCACCAAGATGGGTGTC 5547
Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545
|| ||||| || ||||| |||| ||| || | ||||| | | || ||||| ||
Sbjct 5548 ACCGGCGGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGAGAGACATCGAA 5607
Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTC---GTCTTTGTTCTTA- 7600
||||||||||| || || | ||||| || || || | || | ||| | | |
Sbjct 5608 AGTACCACCACCGAGATCGTAGATGAGGACATTGCGCTCCTTCTCGGACTT--TCCAGAG 5665
Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660
|||||||||| || || || || || || || || || || ||||| ||| ||| ||
Sbjct 5666 CCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGAACGTTGAGA 5725
Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720
|| ||||| | | ||||| || || || |||| || ||||| |||||||| |||
Sbjct 5726 CCGGCAATGGCACCAGCATCCTTGGTGGCCTGTCTCTGGTTGTCGTTGAAGTAGGCTGGG 5785
Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| || | ||| || | | ||| |||| ||||| | | || || | ||||||||
Sbjct 5786 ACAGTGATGACAGCCTTGGAGACACTCTTTCCGAGCTTAGTCTCGGCAACTTCTTTCAT 5844
>seq1055
Length=3912
Score = 125 bits (138), Expect = 9e-24
Identities = 340/516 (66%), Gaps = 11/516 (2%)
Strand=Plus/Minus
Query 105484 TCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGAC 105543
|||||||||| ||||| || || | | || |||| || || || || | | |
Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117
Query 105544 CAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAG 105603
|||| |||| |||||| || |||||||||||||| ||| |||||| ||| | |||
Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057
Query 105604 AGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGA 105663
|| || || | | ||||| | || || ||| || | || || || || |
Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997
Query 105664 ATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCC 105717
| ||| || |||||||| || | |||| |||| || | | | ||||| ||
Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAA-AGGCAC--CAGGACGCTTGTTGCCG 1940
Query 105718 GCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCG 105777
| || | ||||||||| ||||| ||| |||| || | ||| || | ||| || | |
Sbjct 1939 CCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTG 1880
Query 105778 GATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAAC 105837
|| | || || |||||| ||| | ||| | ||||| | | ||| |||| |
Sbjct 1879 GAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGG 1820
Query 105838 CCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCG 105897
|| ||||| || || ||| ||| ||||| || | ||| ||||| |||||
Sbjct 1819 CCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1760
Query 105898 TCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGT 105956
|||||||| || ||||| | |||| ||||| || || | |||||| || ||| || ||
Sbjct 1759 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGG-CTGCGGGGT 1701
Query 105957 ACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992
|| |||||||| || || || | ||||| ||||
Sbjct 1700 TCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAA 1665
>seq591
Length=274
Score = 113 bits (124), Expect = 6e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || || || | |||||||| ||||||||
Sbjct 186 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATACCC 127
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||| ||| | | | || ||||| || ||||||||||| || || || ||||| |||
Sbjct 126 TCTTCGATGGTCAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGAACG 67
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || | ||||||||||||||||| || || || || || || || ||
Sbjct 66 TTGCGCTCACCCTCGGTCTTCTTATCGAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCG 7
Query 7637 TTAAT 7641
|| ||
Sbjct 6 TTGAT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635106719859400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |