Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1055 147 3e-30 seq2158 123 3e-23 >seq1055 Length=3912 Score = 147 bits (162), Expect = 3e-30 Identities = 471/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || ||||| || | || || |||||||| | || | |||||||||||| || Sbjct 2305 TGGTACGCCATTCTTGAGGCCCAGACGGAGACTGGAAACCCTTTTATGCTTTACAAGGAT 2364 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| |||||| || || ||||| | ||| ||| || || || || || Sbjct 2365 TCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGTAGCTCAAATCTTTGC 2424 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || |||||| | |||| ||| | | ||||||| || || || ||| | ||||| ||| Sbjct 2425 ACTGAAATCGTTGAATATACCGCCCCAGATGAGGTTGCAGTTTGCAACTTGGCATCTATC 2484 Query 112458 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 112516 || || |||| | ||||||| | | | || || |||| || |||||||| || Sbjct 2485 GCCCTTCCCACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 2543 Query 112517 AGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 112576 |||||| | || | |||| | ||||| | || ||| | || ||||| || Sbjct 2544 AGTTACTCAGGTCGTTGTCAGAAACTTGAACAGGATCATAGATGGGAACCACTACCCGGT 2603 Query 112577 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCT 112636 ||| || || | ||| | | || ||||| |||| | |||| ||||| || || Sbjct 2604 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGTCCCATTGCTGTCGGCGTCCAGGGACT 2663 Query 112637 CGCGGATGTATTCAT---TCTTTG-TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 112692 || |||| ||| | |||| | | || | || || || |||||| ||| Sbjct 2664 TGCTGATGCTTTCCTCGCTCTTCGATTGC----CCTTCGACTCACCCGAAGCCAAGCTTT 2719 Query 112693 TCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTG 112751 | || | | || || ||||| | || || || || |||| || | ||| | Sbjct 2720 TGAACACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAGCTT 2778 Query 112752 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 112811 || |||| ||||||||||| ||| ||||||||| || | ||| || || | ||| Sbjct 2779 GCCAAGGTCGATGGTCCATACTCCTCCTATGAGGGTTCCCCTGTTTCTCAGGGTATCCTT 2838 Query 112812 CAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGA 112870 |||| ||||||| |||| || | |||| | | || |||||||| | ||| || | Sbjct 2839 CAATACGATATGT-GGAACGTAACGCCAACCGACCTCTGGGACTGGGATGGTCTTAAAGC 2897 Query 112871 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 112930 ||| || | ||| | |||||||| | | | || || |||||||| ||| Sbjct 2898 TGAGATCTCCAAGCACGGTGTCCGTAACAGCTTACTACTTGCGCCCATGCCAACTGCCAG 2957 Query 112931 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 2958 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 3014 Score = 145 bits (160), Expect = 9e-30 Identities = 405/617 (66%), Gaps = 21/617 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||| | ||||| || ||| |||||||||| || || || |||| || Sbjct 1572 CCACAGCATATGATAATGCGAGTTGCGGTCGGTATCCACGGCGAGGACGTTGAGAAAGTA 1631 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | || |||||| | ||||||| | || |||| ||| || | || |||||||| Sbjct 1632 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACCCTCTT 1690 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || || |||||| | || ||||| |||| | |||||||| Sbjct 1691 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1750 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGG 111846 ||| | || || |||| ||| |||||| ||||| ||||||||| | Sbjct 1751 CAGTATCGAAGGTATCTACGACAC----ACTGAAGACCTGTGCTTTGATCTCAAAGACTG 1806 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 | || |||||||| | || |||| | || | |||| | || ||| || | Sbjct 1807 CCGGAGGTATCGGCCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAA 1866 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | || ||| | || |||||||| || || ||| ||| || | | Sbjct 1867 CCAACGGCTCCTCCAACGGAATTGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGAT 1926 Query 111967 ATGTAAACCAAGCTGGGCGTCG-CAAGGGATCTA------TCGCAGTCTATCTTGAGCCA 112019 |||| |||| ||||| | |||| | || | || |||| || |||||| Sbjct 1927 ATGTCGACCA----GGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCA 1982 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| || ||| || | ||||||||||| | || ||||| || | || || | Sbjct 1983 TGGCATGCTGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTC 2042 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || ||| |||||||||| || || |||| ||| ||| | ||||||||| ||||||| Sbjct 2043 CGTGCCCGTGATCTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAA 2102 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| |||| ||||| | || || || || | |||| || || | | |||| | Sbjct 2103 AAGAATGGCGATTGGACCCTATTCTGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTAC 2162 Query 112200 GGTGAGGAGTTTGAAGC 112216 || || |||||||| || Sbjct 2163 GGAGAAGAGTTTGAGGC 2179 >seq2158 Length=8959 Score = 123 bits (136), Expect = 3e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 |||||||||||| | ||||| || |||||||| || ||| | |||| || || Sbjct 2344 AGTTCCATGTATCCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTC 2285 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 |||| || |||| || | || ||||| ||| |||||||| |||||| || Sbjct 2284 CA---CCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGG 2228 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 |||||| | | || | ||||| |||||||| ||||||||||| || ||| |||||| Sbjct 2227 CTCCTTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTC 2168 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| |||||||| |||||||| || || ||| || ||||| Sbjct 2167 CAACGAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 2123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620716910765200