Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1055 150 2e-31 seq2131 111 2e-19 >seq1055 Length=3912 Score = 150 bits (166), Expect = 2e-31 Identities = 410/625 (66%), Gaps = 11/625 (2%) Strand=Plus/Minus Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 ||||| ||||||| || | |||||| ||||||| | || |||| | ||| ||| Sbjct 2185 TACAAAGCCTCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAG 2126 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 || |||| ||||| ||| || ||||| | ||||||||||| |||||| |||||| Sbjct 2125 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGG 2066 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 ||| |||| || |||||| ||| | ||||| | || ||||| ||| || || | Sbjct 2065 GCCAAGAAGAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 2006 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG- 110762 || || | || ||| | |||||||| || || |||| ||| | || || | |||| Sbjct 2005 AACTCAAAGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACC---AGGACGC 1949 Query 110763 -----ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || |||||| ||||| | || ||| ||||| || | ||||| || | | Sbjct 1948 TTGTTGCCGCCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACA 1889 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877 ||||| | ||| || || || || ||| ||| ||||||| || |||| Sbjct 1888 ATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGG 1829 Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACC 110936 | | | || ||||| || || ||| || ||||| ||| | ||||| | Sbjct 1828 ACGTTAAGGCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCT-TCAGTGTGTC 1770 Query 110937 ATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGG 110996 || ||||| || || || |||| || |||| || ||||| |||| ||| || || Sbjct 1769 GTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGG 1710 Query 110997 ACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACAT 111056 | || ||||| ||||||||||| || || | ||||| |||| |||||||| Sbjct 1709 CTGCGGGGTTCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACAT 1650 Query 111057 CTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCG 111116 |||||||| || | | | || || | ||||| ||||| | |||||||| Sbjct 1649 GAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCG 1590 Query 111117 CATGAACATATATTGAGGCGTTTCG 111141 ||| | ||||| || ||| |||| Sbjct 1589 CATTATCATATGCTGTGGCCGTTCG 1565 >seq2131 Length=43390 Score = 111 bits (122), Expect = 2e-19 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 || |||| ||| |||||||| | |||| ||| |||||||| ||||| | || ||| Sbjct 3158 GCATCAAGCTCGTCGATGAAGATGATAGCTGGTGCTTTGGCACGGGCCTGGGCAAACAGT 3217 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 ||||| |||||||| ||||||||||| ||| | ||||| |||| | | | | || Sbjct 3218 TCACGGACACGCTTAGCTCCAACACCGACGTATATCTCGTCGAACTCAGAGCCGGACATG 3277 Query 11803 TGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTA 11862 | | ||||||||| | || ||||| | |||| || ||||| |||||||| || Sbjct 3278 TAGAAGAAGGGAACGCCTGCTTCGCCAGCAACAGCTCTGGCAAGGAGCGTCTTACCGGTT 3337 Query 11863 CCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGC 11922 || || | ||| ||||||| ||| ||||| || | || | || | ||| Sbjct 3338 CCGGGAGGTCCAACGAGAAGTATGCCTTTGGGGAGTTTACCGCCTAGGGAAGAGAATCGC 3397 Query 11923 TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCC 11982 ||||| || | ||| || |||| ||| | ||||| ||||| || |||| || Sbjct 3398 TCAGGGTTAGACAAGAATTCAACAAGCTCTTGCAGTTCATCCTTTGCCTCGTCGCAGCCG 3457 Query 11983 TCAACATCGGTGAA 11996 | |||||| |||| Sbjct 3458 TGAACATCACTGAA 3471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588951815173000